Non-Coding RNA Search

Ss1.1-Pig3-SRG8025N10.3

Sequence:


               
               GGACCACGCCCCCGCCCAGCCGACGGGTCTGGTCCCCGCCCAGTGTCCATAAGGTGGAAA
TGGGCTTCGGTGGGGGCGGAGGAGCAAACTGAAGAGGCGGGCTACTGGGGGTAGCCTTCG
AAGGAGGGAAGAGGAACGGGAGCCAGGGGCCCTGTGGCTCTTACGTGGTGTCCCCACACA
CCTACTGTCTTCCTATCTCAATAGACTTGTACATATTCTGGAGTTGGGACCGCGTTGCAC
CACGGATCACCCCATTCCACTCTGCAGCCCCTCCTCCCCAAAGTATCCCCAAACCCAGCC
CTTCGTCCCCCTCAGATGGGTACACTGAAGCCCCAGCCCCAGAGTAGAATAGGGCGCACT
CGGTGGGGAGTGGGGAGGGAGAGGGGGCTAGTGGAGCATCCTGGAGTCGCTGGGTCAAGG
GTCAGGTGGTTGTAGTCTGTACCTGAAGTCTGTGTTTGTGTTGTTGTGGGGACCAGGTCT
TTGAGCCCCACCCTTGTCCTGGAACATACCCTGTCCCTCAAAGGATGTGCCCCTTATTTC
CACCCTAACCTCTCCTCTCCCACCTTGGCGTCCCCCACCTTGATTCTCACTGGGGAGGGG
GGAGTGAAGACAAGGAGGGAGTAAGTTGTAGGAGTTTTTATTTTAAATCTTATTTTTTTT
AAATGGTGATTAAAATATTTATTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGACCACGCCCCCGCCCAGCCGACGGGTCTGGTCCCCGCCCAGTGTCCATAAGGTGGAAA
TGGGCTTCGGTGGGGGCGGAGGAGCAAACTGAAGAGGCGGGCTACTGGGGGTAGCCTTCG
AAGGAGGGAAGAGGAACGGGAGCCAGGGGCCCTGTGGCTCTTACGTGGTGTCCCCACACA
CCTACTGTCTTCCTATCTCAATAGACTTGTACATATTCTGGAGTTGGGACCGCGTTGCAC
CACGGATCACCCCATTCCACTCTGCAGCCCCTCCTCCCCAAAGTATCCCCAAACCCAGCC
CTTCGTCCCCCTCAGATGGGTACACTGAAGCCCCAGCCCCAGAGTAGAATAGGGCGCACT
CGGTGGGGAGTGGGGAGGGAGAGGGGGCTAGTGGAGCATCCTGGAGTCGCTGGGTCAAGG
GTCAGGTGGTTGTAGTCTGTACCTGAAGTCTGTGTTTGTGTTGTTGTGGGGACCAGGTCT
TTGAGCCCCACCCTTGTCCTGGAACATACCCTGTCCCTCAAAGGATGTGCCCCTTATTTC
CACCCTAACCTCTCCTCTCCCACCTTGGCGTCCCCCACCTTGATTCTCACTGGGGAGGGG
GGAGTGAAGACAAGGAGGGAGTAAGTTGTAGGAGTTTTTATTTTAAATCTTATTTTTTTT
AAATGGTGATTAAAATATTTATTG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               537-639, + strand, RNAz p=0.825675

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               537-639, + strand, RNAz p=0.825675

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_005453, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_005453, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-684, gnl|bosTau2|chr23 (5847568-5846875)
               

               
               1-684, gnl|Hg17|chr6 (33390858-33390181)
               

               
               1-684, gnl|Mm7|chr17 (31996944-31997555)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-684, gnl|bosTau2|chr23 (5847568-5846875)
               

               
               1-684, gnl|Hg17|chr6 (33390858-33390181)
               

               
               1-684, gnl|Mm7|chr17 (31996944-31997555)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               mcp (0.170648)
               

               
               che (0.136314)
               

               
               ebs (0.118301)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mcp (0.170648)
               

               
               che (0.136314)
               

               
               ebs (0.118301)

	1-684, gnl\|bosTau2\|chr23 (5847568-5846875)
	1-684, gnl\|Hg17\|chr6 (33390858-33390181)
	1-684, gnl\|Mm7\|chr17 (31996944-31997555)