Non-Coding RNA Search

Ss1.1-Pig3-SRG8025N20.3

Sequence:


               
               AAATCTGCAGCACATTGATAAGATGGTTTCAGTTATCTATAGTAAGATTGAAATTTCCAT
TGTAATTCATAACTAATCAGATGAAATTCTATTTATTTTAATTTTTAAACTTCCCAGATT
GGGGCTAGTTTGAGGTTATTTCTGCCTATAAATTTACTCTGTTGAATATTTAGTGTAAAT
TTAATACAGGCGTTTTTATTTATATACTTTGAGAGATTTGTTACCTAATAACGTCTTTTT
GTGGTAGCTCTTCTAAGAGTAAGAGTTGGTTCATCTAAAATGTGGACATATTCTTTCTAC
ACCTACTACCTGGTATTATTTCGAATCTTAACTACAATTTTGTTATTACAGAATTTACAC
TTAGTACTAAGGATATTCTTCTATATATGAAAAATCACTTAAATATGAGAAGATGGCATT
CTACGTGGCTGTGAGATGAAATGTGTCGGATTTGGTATGCATTATTTCGAGAACTGTGAA
CATGTGTTAATAACACTATAGCAATCACGAGGTGACTGTAACTTGCATTTAATGCATTAC
AAAAGAGGGCAGGCAGACTTTCTAGGAGAAGCTTATCATTTGAAGGGTTTCATAAAAGGA
CAATCTTGAACTTTATGGATTTTATTAAAACCATGTGTTCCTTGTTACCAATAATTTGAC
ACTTAATTGAAACATTTAATTGCTATTGAACAAAGGATGATCTCACTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAATCTGCAGCACATTGATAAGATGGTTTCAGTTATCTATAGTAAGATTGAAATTTCCAT
TGTAATTCATAACTAATCAGATGAAATTCTATTTATTTTAATTTTTAAACTTCCCAGATT
GGGGCTAGTTTGAGGTTATTTCTGCCTATAAATTTACTCTGTTGAATATTTAGTGTAAAT
TTAATACAGGCGTTTTTATTTATATACTTTGAGAGATTTGTTACCTAATAACGTCTTTTT
GTGGTAGCTCTTCTAAGAGTAAGAGTTGGTTCATCTAAAATGTGGACATATTCTTTCTAC
ACCTACTACCTGGTATTATTTCGAATCTTAACTACAATTTTGTTATTACAGAATTTACAC
TTAGTACTAAGGATATTCTTCTATATATGAAAAATCACTTAAATATGAGAAGATGGCATT
CTACGTGGCTGTGAGATGAAATGTGTCGGATTTGGTATGCATTATTTCGAGAACTGTGAA
CATGTGTTAATAACACTATAGCAATCACGAGGTGACTGTAACTTGCATTTAATGCATTAC
AAAAGAGGGCAGGCAGACTTTCTAGGAGAAGCTTATCATTTGAAGGGTTTCATAAAAGGA
CAATCTTGAACTTTATGGATTTTATTAAAACCATGTGTTCCTTGTTACCAATAATTTGAC
ACTTAATTGAAACATTTAATTGCTATTGAACAAAGGATGATCTCACTC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               80-191, + strand, RNAz p=0.988362

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               80-191, + strand, RNAz p=0.988362

Aligned organism(s): 14 entry(ies)

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Aligned organism(s): 14 entry(ies)

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               1-708, gnl|bosTau2|chr7 (28508011-28507283)
               

               
               1-708, gnl|canFam2|chr11 (24168739-24169348)
               

               
               1-708, gnl|echTel1|scaffold_307517 (9442-10006)
               

               
               1-708, gnl|galGal2|chr13 (16106531-16107186)
               

               
               1-708, gnl|hg17|chr5 (132243608-132244214)
               

               
               1-708, gnl|Hg17|chr5 (132244438-132243719)
               

               
               1-708, gnl|loxAfr1|scaffold_38190 (10331-9722)
               

               
               1-708, gnl|mm7|chr11 (53373250-53372695)
               

               
               1-708, gnl|Mm7|chr11 (53372482-53373146)
               

               
               1-708, gnl|monDom2|scaffold_6 (92344138-92343502)
               

               
               1-708, gnl|oryCun1|scaffold_204311 (35866-36470)
               

               
               1-708, gnl|panTro1|chr4 (138582422-138583028)
               

               
               1-708, gnl|rheMac2|chr6 (129284877-129285484)
               

               
               1-708, gnl|rn3|chr10 (38884136-38883597)

Aligned organism(s): 14 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-708, gnl|bosTau2|chr7 (28508011-28507283)
               

               
               1-708, gnl|canFam2|chr11 (24168739-24169348)
               

               
               1-708, gnl|echTel1|scaffold_307517 (9442-10006)
               

               
               1-708, gnl|galGal2|chr13 (16106531-16107186)
               

               
               1-708, gnl|hg17|chr5 (132243608-132244214)
               

               
               1-708, gnl|Hg17|chr5 (132244438-132243719)
               

               
               1-708, gnl|loxAfr1|scaffold_38190 (10331-9722)
               

               
               1-708, gnl|mm7|chr11 (53373250-53372695)
               

               
               1-708, gnl|Mm7|chr11 (53372482-53373146)
               

               
               1-708, gnl|monDom2|scaffold_6 (92344138-92343502)
               

               
               1-708, gnl|oryCun1|scaffold_204311 (35866-36470)
               

               
               1-708, gnl|panTro1|chr4 (138582422-138583028)
               

               
               1-708, gnl|rheMac2|chr6 (129284877-129285484)
               

               
               1-708, gnl|rn3|chr10 (38884136-38883597)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cbl (0.114797)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbl (0.114797)

	1-708, gnl\|bosTau2\|chr7 (28508011-28507283)
	1-708, gnl\|canFam2\|chr11 (24168739-24169348)
	1-708, gnl\|echTel1\|scaffold_307517 (9442-10006)
	1-708, gnl\|galGal2\|chr13 (16106531-16107186)
	1-708, gnl\|hg17\|chr5 (132243608-132244214)
	1-708, gnl\|Hg17\|chr5 (132244438-132243719)
	1-708, gnl\|loxAfr1\|scaffold_38190 (10331-9722)
	1-708, gnl\|mm7\|chr11 (53373250-53372695)
	1-708, gnl\|Mm7\|chr11 (53372482-53373146)
	1-708, gnl\|monDom2\|scaffold_6 (92344138-92343502)
	1-708, gnl\|oryCun1\|scaffold_204311 (35866-36470)
	1-708, gnl\|panTro1\|chr4 (138582422-138583028)
	1-708, gnl\|rheMac2\|chr6 (129284877-129285484)
	1-708, gnl\|rn3\|chr10 (38884136-38883597)