Ss1.1-Pig3-SRG8025O14.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CGGGTTTGTTTTCAAGCGGGGACCTAAACAAAAGTAGGACACCTGATCTCTGGGTCGAAG GGCGCAGGTAATATGCACGTGTCACTAGCCGAGGCCCTGGAAGTTCGGGGTGGACCACTG CAGGAGGAGGAAATATGGGCTGTATTAAATCAAAGTGCCGAAAGTCTCCAAGAATTATTC AGAAAAGTAAGCATAGCTGATCCTGCTGCCCTTGGCTTCATCATTTCTCCGTGGTCCCTG CTGCTGCTGCCATCTGGTAGCGTGTCATTTACAGATGAAAATATTTCCAACCAGGATCTT CGCGCATTCACGGCACCAGAGGTTCTTCAAAATCAGTCACTCACGTCTCTCTCTGACGTC GAAAAGATCCATATTTATTCTCTTGGAATGACATTGTATTGGGGGGCTGATCATGAAGTA CCTCAGAGCCAACCTATCAGGCTCGGAGATCATCTCAACAGTATCCTGCTTGGAATGTGC GAGGACGTCATTTACGCTCGGGTTTCTGTGCGGACTGTCCTGGACGCTTGCAGTGCCCAC ATTAGGAACAGCAACTGTGCACCTTCGTTTTCCTACGTGAAGCAGTTGGTAAAACTGGTT CTGGGAAATCTTTCTGGGACGGATCAGCTTTCCCGTAACAATGAACAGAAGCCTGATCGA AGCCAGGCTCTCCGAGACCGGCTGAGAGGAAAAGGATTACCCACAGGAAGAAGCTCTCCT TCTGATGTGCTAGACACATACAAGTCTCCATTCCCTCATCAGACCTTTCTTAACAAAGGG CTTAGTAAATCTATGGGATTTCTGTCCATCAGAGACACACACGATGAGGACGATTATTTC AAGGACATGCCATCAGATAATAATTCTGGACATGAAGATTCCGAAAAGTCCTGCTCCCCT TACCAGTTCAAAGCTAGTGGCCCCGAAAAGAAAGCT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CGGGTTTGTTTTCAAGCGGGGACCTAAACAAAAGTAGGACACCTGATCTCTGGGTCGAAG GGCGCAGGTAATATGCACGTGTCACTAGCCGAGGCCCTGGAAGTTCGGGGTGGACCACTG CAGGAGGAGGAAATATGGGCTGTATTAAATCAAAGTGCCGAAAGTCTCCAAGAATTATTC AGAAAAGTAAGCATAGCTGATCCTGCTGCCCTTGGCTTCATCATTTCTCCGTGGTCCCTG CTGCTGCTGCCATCTGGTAGCGTGTCATTTACAGATGAAAATATTTCCAACCAGGATCTT CGCGCATTCACGGCACCAGAGGTTCTTCAAAATCAGTCACTCACGTCTCTCTCTGACGTC GAAAAGATCCATATTTATTCTCTTGGAATGACATTGTATTGGGGGGCTGATCATGAAGTA CCTCAGAGCCAACCTATCAGGCTCGGAGATCATCTCAACAGTATCCTGCTTGGAATGTGC GAGGACGTCATTTACGCTCGGGTTTCTGTGCGGACTGTCCTGGACGCTTGCAGTGCCCAC ATTAGGAACAGCAACTGTGCACCTTCGTTTTCCTACGTGAAGCAGTTGGTAAAACTGGTT CTGGGAAATCTTTCTGGGACGGATCAGCTTTCCCGTAACAATGAACAGAAGCCTGATCGA AGCCAGGCTCTCCGAGACCGGCTGAGAGGAAAAGGATTACCCACAGGAAGAAGCTCTCCT TCTGATGTGCTAGACACATACAAGTCTCCATTCCCTCATCAGACCTTTCTTAACAAAGGG CTTAGTAAATCTATGGGATTTCTGTCCATCAGAGACACACACGATGAGGACGATTATTTC AAGGACATGCCATCAGATAATAATTCTGGACATGAAGATTCCGAAAAGTCCTGCTCCCCT TACCAGTTCAAAGCTAGTGGCCCCGAAAAGAAAGCT |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 24 entry(ies) | More info |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
| 186-366, gnl|bosTau2|chr6 (59588816-59588636) | |
| 186-366, gnl|Hg17|chr4 (87950695-87950875) | |
| 186-366, gnl|Mm7|chr5 (102666250-102666430) | |
| 430-618, gnl|bosTau2|chr6 (59578103-59577915) | |
| 430-618, gnl|canFam2|chr32 (13176961-13177159) | |
| 430-618, gnl|danRer3|chrUn (110768757-110768562) | |
| 430-618, gnl|dasNov1|scaffold_3753 (31981-32181) | |
| 430-618, gnl|echTel1|scaffold_48901 (520-718) | |
| 430-618, gnl|fr1|chrUn (162269923-162269729) | |
| 430-618, gnl|galGal2|chr4 (46463229-46463042) | |
| 430-618, gnl|hg17|chr4 (87967312-87967509) | |
| 430-618, gnl|Hg17|chr4 (87967334-87967522) | |
| 430-618, gnl|loxAfr1|scaffold_29567 (19052-19250) | |
| 430-618, gnl|mm7|chr5 (102678891-102679085) | |
| 430-618, gnl|Mm7|chr5 (102678910-102679098) | |
| 430-618, gnl|monDom2|scaffold_37 (16405813-16405613) | |
| 430-618, gnl|oryCun1|scaffold_215465 (5144-4946) | |
| 430-618, gnl|rheMac2|chr5 (79636707-79636905) | |
| 430-618, gnl|rn3|chr14 (7407436-7407242) | |
| 430-618, gnl|tetNig1|chr4 (3625969-3626151) | |
| 430-618, gnl|xenTro1|scaffold_867 (196616-196424) | |
| 704-936, gnl|bosTau2|chr6 (59561286-59561054) | |
| 704-936, gnl|Hg17|chr4 (87979570-87979796) | |
| 704-936, gnl|Mm7|chr5 (102690669-102690893) |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 186-366, gnl|bosTau2|chr6 (59588816-59588636) | |
| 186-366, gnl|Hg17|chr4 (87950695-87950875) | |
| 186-366, gnl|Mm7|chr5 (102666250-102666430) | |
| 430-618, gnl|bosTau2|chr6 (59578103-59577915) | |
| 430-618, gnl|canFam2|chr32 (13176961-13177159) | |
| 430-618, gnl|danRer3|chrUn (110768757-110768562) | |
| 430-618, gnl|dasNov1|scaffold_3753 (31981-32181) | |
| 430-618, gnl|echTel1|scaffold_48901 (520-718) | |
| 430-618, gnl|fr1|chrUn (162269923-162269729) | |
| 430-618, gnl|galGal2|chr4 (46463229-46463042) | |
| 430-618, gnl|hg17|chr4 (87967312-87967509) | |
| 430-618, gnl|Hg17|chr4 (87967334-87967522) | |
| 430-618, gnl|loxAfr1|scaffold_29567 (19052-19250) | |
| 430-618, gnl|mm7|chr5 (102678891-102679085) | |
| 430-618, gnl|Mm7|chr5 (102678910-102679098) | |
| 430-618, gnl|monDom2|scaffold_37 (16405813-16405613) | |
| 430-618, gnl|oryCun1|scaffold_215465 (5144-4946) | |
| 430-618, gnl|rheMac2|chr5 (79636707-79636905) | |
| 430-618, gnl|rn3|chr14 (7407436-7407242) | |
| 430-618, gnl|tetNig1|chr4 (3625969-3626151) | |
| 430-618, gnl|xenTro1|scaffold_867 (196616-196424) | |
| 704-936, gnl|bosTau2|chr6 (59561286-59561054) | |
| 704-936, gnl|Hg17|chr4 (87979570-87979796) | |
| 704-936, gnl|Mm7|chr5 (102690669-102690893) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ret (0.128733) | |
| pgl (0.118483) |