Non-Coding RNA Search

Ss1.1-Pig3-SRG8025O21.3.5

Sequence:


               
               CTTTTCTGCTCAGTTGTGTAACATCTCACTTTAGCCAGAGTCACTGTTTATGAACAGCCC
CCTACTTCCTTGTCCAGCTTTCCTTCCTTCCTTCCTGTTTCCTCCCGTTTTTCTCTCAAG
TAGGCACCTACTTACTACTTTGGCTTGTTGTGGGGGTTTGACTCACCTCCTCAACTGCTG
GTCTCTCCTTCCTGGTTGGAAATGTCATTGGGAACTTGCCAGTGCCCAGAAAGGGACAAA
CTGCAGCCTGGAGAGTGTGTTGGGAGCCAGGGACAGCCAGCTTCCTACCACAGGCTTCCT
GAGGACTCTCTAGGCCTTAGGGAACAAGACGGATCATTCACTTCTTCAGTACAGCTTTTC
CTGTAAGCCAAGCCAGGTTTGTTTTAGATTAACTGTGGCTTTAAAAAAAAAAAAAAGTGC
CTTTTGCTGCTTTGAGGAATTGAGGTGTACAGTATGAAGCAGCCGTGTACTTTCGTTTTC
CGGTCTGTTGCGGGCACTGTTCTCTCTTGGCAGGTGTTTTCTTAAACGTGCCAGAAGCAC
ACTACCCACCACAGTCAGACCTCTGCTTCCTCCCCGTACACCCATAGTGTGCAGAGTGGA
GGGCCTTTGGTTTGGCAAGAGCCGCGAGCCCAGAGTGCTTAGGAGAGGCGTCTCTCTACC
CTTGAGTTACACTAAGCACTTTACAGCCAAAAAAAAAAAAAGCTCAAAGTGATGGATCAT
TCTCCATAGCAGGAGTCCCAACTGGGCTGAGTGTGATGCTGATGATTAATCTAGAAAATG
GTAGATCCATCAAGACAAAGGAAATTCTGCTAGGATCCAGATGATGTGACAGCTTCTCCC
ACAGTAAGTTTGTCCTCACATCCTCTTTCCAGACGGACAGCATCAGCCCCCCTGCCGAAG
ACCCTCGGGCCTGTCTGTAAATAAGGAATTGATGGGGAAGAGGGAAGGGGGTGCATGTGA
TCAGGAGCCCAAGGCCACAGCTTTTTGTTTTTTGTTTTTCATTTTATGGCCACACCCGTG
GCATATGGAAATTTCTAAGCCAGGGATTGAATCCGAGCCTCAGCTGCAGCAACCCTGGAT
ACTTGCCGGGCTGAGGGTAGAACCCCAGACCTCTGCAGCAACCCATTTAACCCACTGCGC
CACAGCAGGAACTCTGCCAGGGCTTTTTGGATCCCAGGAAGCAGGTGGCATTTGCTACCG
TTGTGGCCTAGGAAGGAGAAAGTTCACTTGTTTCATAGCTTTGCTAACCACAGGATTCTC
CCCTGCCAATGAGAAGAAAGCATTATCTTTTTACCTTCAGGTGGTTTACTATTCTGTAAA
GAATCTGTGTAAATATTTTGTACAGAGCCCTGTATGAAATAAATAGCCATGTATGGTTAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTTTTCTGCTCAGTTGTGTAACATCTCACTTTAGCCAGAGTCACTGTTTATGAACAGCCC
CCTACTTCCTTGTCCAGCTTTCCTTCCTTCCTTCCTGTTTCCTCCCGTTTTTCTCTCAAG
TAGGCACCTACTTACTACTTTGGCTTGTTGTGGGGGTTTGACTCACCTCCTCAACTGCTG
GTCTCTCCTTCCTGGTTGGAAATGTCATTGGGAACTTGCCAGTGCCCAGAAAGGGACAAA
CTGCAGCCTGGAGAGTGTGTTGGGAGCCAGGGACAGCCAGCTTCCTACCACAGGCTTCCT
GAGGACTCTCTAGGCCTTAGGGAACAAGACGGATCATTCACTTCTTCAGTACAGCTTTTC
CTGTAAGCCAAGCCAGGTTTGTTTTAGATTAACTGTGGCTTTAAAAAAAAAAAAAAGTGC
CTTTTGCTGCTTTGAGGAATTGAGGTGTACAGTATGAAGCAGCCGTGTACTTTCGTTTTC
CGGTCTGTTGCGGGCACTGTTCTCTCTTGGCAGGTGTTTTCTTAAACGTGCCAGAAGCAC
ACTACCCACCACAGTCAGACCTCTGCTTCCTCCCCGTACACCCATAGTGTGCAGAGTGGA
GGGCCTTTGGTTTGGCAAGAGCCGCGAGCCCAGAGTGCTTAGGAGAGGCGTCTCTCTACC
CTTGAGTTACACTAAGCACTTTACAGCCAAAAAAAAAAAAAGCTCAAAGTGATGGATCAT
TCTCCATAGCAGGAGTCCCAACTGGGCTGAGTGTGATGCTGATGATTAATCTAGAAAATG
GTAGATCCATCAAGACAAAGGAAATTCTGCTAGGATCCAGATGATGTGACAGCTTCTCCC
ACAGTAAGTTTGTCCTCACATCCTCTTTCCAGACGGACAGCATCAGCCCCCCTGCCGAAG
ACCCTCGGGCCTGTCTGTAAATAAGGAATTGATGGGGAAGAGGGAAGGGGGTGCATGTGA
TCAGGAGCCCAAGGCCACAGCTTTTTGTTTTTTGTTTTTCATTTTATGGCCACACCCGTG
GCATATGGAAATTTCTAAGCCAGGGATTGAATCCGAGCCTCAGCTGCAGCAACCCTGGAT
ACTTGCCGGGCTGAGGGTAGAACCCCAGACCTCTGCAGCAACCCATTTAACCCACTGCGC
CACAGCAGGAACTCTGCCAGGGCTTTTTGGATCCCAGGAAGCAGGTGGCATTTGCTACCG
TTGTGGCCTAGGAAGGAGAAAGTTCACTTGTTTCATAGCTTTGCTAACCACAGGATTCTC
CCCTGCCAATGAGAAGAAAGCATTATCTTTTTACCTTCAGGTGGTTTACTATTCTGTAAA
GAATCTGTGTAAATATTTTGTACAGAGCCCTGTATGAAATAAATAGCCATGTATGGTTAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               142-458, - strand, RNAz p=0.804649
               

               
               631-742, + strand, RNAz p=0.902731

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               142-458, - strand, RNAz p=0.804649
               

               
               631-742, + strand, RNAz p=0.902731

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               417-488, + strand, RNAmicro p=0.935012

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               417-488, + strand, RNAmicro p=0.935012

Aligned organism(s): 7 entry(ies)

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Aligned organism(s): 7 entry(ies)

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               69-599, gnl|bosTau2|chr13 (41921131-41920598)
               

               
               69-599, gnl|Hg17|chr20 (366284-365830)
               


               
               631-987, gnl|bosTau2|chr13 (41920605-41920252)
               

               
               631-987, gnl|Hg17|chr20 (365837-365141)
               


               
               1156-1379, gnl|bosTau2|chr13 (41920265-41920046)
               

               
               1156-1379, gnl|Hg17|chr20 (365154-364931)
               

               
               1156-1379, gnl|Mm7|chr2 (152054652-152054847)

Aligned organism(s): 7 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               69-599, gnl|bosTau2|chr13 (41921131-41920598)
               

               
               69-599, gnl|Hg17|chr20 (366284-365830)
               


               
               631-987, gnl|bosTau2|chr13 (41920605-41920252)
               

               
               631-987, gnl|Hg17|chr20 (365837-365141)
               


               
               1156-1379, gnl|bosTau2|chr13 (41920265-41920046)
               

               
               1156-1379, gnl|Hg17|chr20 (365154-364931)
               

               
               1156-1379, gnl|Mm7|chr2 (152054652-152054847)

Expressed library(ies): 14 entry(ies)

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Expressed library(ies): 14 entry(ies)

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               jca (0.34188)
               

               
               lnt (0.284616)
               

               
               ece (0.229305)
               

               
               ill (0.175593)
               

               
               fhi (0.169578)
               

               
               cag (0.151194)
               

               
               fat (0.147427)
               

               
               pty (0.142714)
               

               
               cst (0.140036)
               

               
               pla (0.133672)
               

               
               nmm (0.132802)
               

               
               med (0.116252)
               

               
               cty (0.10408)
               

               
               nbm (0.0993246)

Expressed library(ies): 14 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               jca (0.34188)
               

               
               lnt (0.284616)
               

               
               ece (0.229305)
               

               
               ill (0.175593)
               

               
               fhi (0.169578)
               

               
               cag (0.151194)
               

               
               fat (0.147427)
               

               
               pty (0.142714)
               

               
               cst (0.140036)
               

               
               pla (0.133672)
               

               
               nmm (0.132802)
               

               
               med (0.116252)
               

               
               cty (0.10408)
               

               
               nbm (0.0993246)

	142-458, - strand, RNAz p=0.804649
	631-742, + strand, RNAz p=0.902731

	69-599, gnl\|bosTau2\|chr13 (41921131-41920598)
	69-599, gnl\|Hg17\|chr20 (366284-365830)

	631-987, gnl\|bosTau2\|chr13 (41920605-41920252)
	631-987, gnl\|Hg17\|chr20 (365837-365141)

	1156-1379, gnl\|bosTau2\|chr13 (41920265-41920046)
	1156-1379, gnl\|Hg17\|chr20 (365154-364931)
	1156-1379, gnl\|Mm7\|chr2 (152054652-152054847)

	jca (0.34188)
	lnt (0.284616)
	ece (0.229305)
	ill (0.175593)
	fhi (0.169578)
	cag (0.151194)
	fat (0.147427)
	pty (0.142714)
	cst (0.140036)
	pla (0.133672)
	nmm (0.132802)
	med (0.116252)
	cty (0.10408)
	nbm (0.0993246)