Ss1.1-Pig3-SRG8026B21.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CCGTGACACCGAGCGCAATAGGATTTTTCCTTGGATAGTCTGGTCTGGAGCTGGGCAGCA GCTGCTGCTGTGACCTCAAAGGAAGATCTTCTGCAGGCTGATTTTGAAGGTGCTTTAAAG TTCTTCAGAGTCCAGCTTCCAAAGAGATACAGGGCGGAAGAAAATGCAAGAAGGTTAATG ATCAGCAAGCCCAATATTAAGGTACCGACCAAGAAGCTAAAGAAATATGAGAAAGAATAT CAGACAATGCGAGAGAGTCAGCTGCAGCAGGAAGACCCCATGGATAGATACAAGTTTGTA TATTTGTAGGTGACTTCACCTGTTGCATTTATACTGGGAGTCTTCATAAGAAGCTGAGAG AAAGAGAGGGAAAAAGAGAGAGAGAAAGTGGCTATCGACTACTTTCAAAAATGAGAAAAA AGGAAAATGCAAAGTACTGTTTTAGCTGTGCACGGTCACATCCACAGAGACTTTTAGAAG GCGAGCTGTTCAAGACTGGCACAAGAAATGTTTCAGACTTACCTCTGCCTGTAGCCCATG TTAAAAATACAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CCGTGACACCGAGCGCAATAGGATTTTTCCTTGGATAGTCTGGTCTGGAGCTGGGCAGCA GCTGCTGCTGTGACCTCAAAGGAAGATCTTCTGCAGGCTGATTTTGAAGGTGCTTTAAAG TTCTTCAGAGTCCAGCTTCCAAAGAGATACAGGGCGGAAGAAAATGCAAGAAGGTTAATG ATCAGCAAGCCCAATATTAAGGTACCGACCAAGAAGCTAAAGAAATATGAGAAAGAATAT CAGACAATGCGAGAGAGTCAGCTGCAGCAGGAAGACCCCATGGATAGATACAAGTTTGTA TATTTGTAGGTGACTTCACCTGTTGCATTTATACTGGGAGTCTTCATAAGAAGCTGAGAG AAAGAGAGGGAAAAAGAGAGAGAGAAAGTGGCTATCGACTACTTTCAAAAATGAGAAAAA AGGAAAATGCAAAGTACTGTTTTAGCTGTGCACGGTCACATCCACAGAGACTTTTAGAAG GCGAGCTGTTCAAGACTGGCACAAGAAATGTTTCAGACTTACCTCTGCCTGTAGCCCATG TTAAAAATACAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 72-470, - strand, RNAz p=0.819049 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 72-470, - strand, RNAz p=0.819049 |
| Aligned organism(s): 32 entry(ies) | More info |
| Aligned organism(s): 32 entry(ies) | Help | Less info |
| 72-204, gnl|bosTau2|chr16 (44489435-44489567) | |
| 72-204, gnl|canFam2|chr7 (27511541-27511397) | |
| 72-204, gnl|danRer3|chr22 (25838398-25838246) | |
| 72-204, gnl|dasNov1|scaffold_6861 (1236-1380) | |
| 72-204, gnl|echTel1|scaffold_229250 (4445-4301) | |
| 72-204, gnl|galGal2|chr8 (7168641-7168498) | |
| 72-204, gnl|hg17|chr1 (171512617-171512761) | |
| 72-204, gnl|Hg17|chr1 (171512626-171512758) | |
| 72-204, gnl|loxAfr1|scaffold_112613 (4363-4219) | |
| 72-204, gnl|mm7|chr1 (160304259-160304115) | |
| 72-204, gnl|Mm7|chr1 (160304248-160304116) | |
| 72-204, gnl|monDom2|scaffold_16 (26048480-26048624) | |
| 72-204, gnl|oryCun1|scaffold_124364 (3712-3568) | |
| 72-204, gnl|panTro1|chr1 (153913363-153913507) | |
| 72-204, gnl|rheMac2|chr1 (204426148-204426292) | |
| 72-204, gnl|rn3|chr13 (75779677-75779533) | |
| 72-204, gnl|tetNig1|chrUn_random (65038113-65038257) | |
| 72-204, gnl|xenTro1|scaffold_197 (1339652-1339508) | |
| 293-552, gnl|bosTau2|chr16 (44605574-44605830) | |
| 293-552, gnl|canFam2|chr7 (27391325-27390855) | |
| 293-552, gnl|dasNov1|scaffold_56875 (10577-10128) | |
| 293-552, gnl|echTel1|scaffold_276891 (45889-45414) | |
| 293-552, gnl|galGal2|chr8 (7131669-7131151) | |
| 293-552, gnl|hg17|chr1 (171658548-171659023) | |
| 293-552, gnl|Hg17|chr1 (171658683-171658934) | |
| 293-552, gnl|mm7|chr1 (160219493-160219037) | |
| 293-552, gnl|Mm7|chr1 (160219351-160219102) | |
| 293-552, gnl|monDom2|scaffold_16 (26154620-26155105) | |
| 293-552, gnl|oryCun1|scaffold_90477 (4902-5366) | |
| 293-552, gnl|panTro1|chr1 (154054002-154054479) | |
| 293-552, gnl|rheMac2|chr1 (204567242-204567717) | |
| 293-552, gnl|rn3|chr13 (75700224-75699758) |
| Aligned organism(s): 32 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 72-204, gnl|bosTau2|chr16 (44489435-44489567) | |
| 72-204, gnl|canFam2|chr7 (27511541-27511397) | |
| 72-204, gnl|danRer3|chr22 (25838398-25838246) | |
| 72-204, gnl|dasNov1|scaffold_6861 (1236-1380) | |
| 72-204, gnl|echTel1|scaffold_229250 (4445-4301) | |
| 72-204, gnl|galGal2|chr8 (7168641-7168498) | |
| 72-204, gnl|hg17|chr1 (171512617-171512761) | |
| 72-204, gnl|Hg17|chr1 (171512626-171512758) | |
| 72-204, gnl|loxAfr1|scaffold_112613 (4363-4219) | |
| 72-204, gnl|mm7|chr1 (160304259-160304115) | |
| 72-204, gnl|Mm7|chr1 (160304248-160304116) | |
| 72-204, gnl|monDom2|scaffold_16 (26048480-26048624) | |
| 72-204, gnl|oryCun1|scaffold_124364 (3712-3568) | |
| 72-204, gnl|panTro1|chr1 (153913363-153913507) | |
| 72-204, gnl|rheMac2|chr1 (204426148-204426292) | |
| 72-204, gnl|rn3|chr13 (75779677-75779533) | |
| 72-204, gnl|tetNig1|chrUn_random (65038113-65038257) | |
| 72-204, gnl|xenTro1|scaffold_197 (1339652-1339508) | |
| 293-552, gnl|bosTau2|chr16 (44605574-44605830) | |
| 293-552, gnl|canFam2|chr7 (27391325-27390855) | |
| 293-552, gnl|dasNov1|scaffold_56875 (10577-10128) | |
| 293-552, gnl|echTel1|scaffold_276891 (45889-45414) | |
| 293-552, gnl|galGal2|chr8 (7131669-7131151) | |
| 293-552, gnl|hg17|chr1 (171658548-171659023) | |
| 293-552, gnl|Hg17|chr1 (171658683-171658934) | |
| 293-552, gnl|mm7|chr1 (160219493-160219037) | |
| 293-552, gnl|Mm7|chr1 (160219351-160219102) | |
| 293-552, gnl|monDom2|scaffold_16 (26154620-26155105) | |
| 293-552, gnl|oryCun1|scaffold_90477 (4902-5366) | |
| 293-552, gnl|panTro1|chr1 (154054002-154054479) | |
| 293-552, gnl|rheMac2|chr1 (204567242-204567717) | |
| 293-552, gnl|rn3|chr13 (75700224-75699758) |
| Expressed library(ies): 3 entry(ies) | More info |
| Expressed library(ies): 3 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| sto (0.179824) | |
| sin (0.174948) | |
| lin (0.145603) |