Non-Coding RNA Search

Ss1.1-Pig3-SRG8026C07.3

Sequence:


               
               CACATTAGCTGTAGAGTGAATGCATGACGCCCCATGACCCCAGTAAAATCTTACCGGTAG
AAAAACCAAGCGCCACTGTTCTGTCATTAGCAGCCCTCTTAAATGTTGCCTCCAGATCCT
TTACATTTTAGCATACATTGTGTTTCTACTGATCTCTCTTAGATTTTTCCTGAATCGGAG
GAAACTATTTTTTCCTTAATAGCAGGAAAGATGAAGAGGTGAAGGGCATTGAAGCAGAAA
TGTATAGTTTGGGGTACGATTTGAAAAAACTGGTAAGGAAAACAAACGTCCTAATTAATT
TCAAGCTAACTGCTCTTAGTTAAGTGCTCTTAAGGAGAGTCTAGTAAGAGTAACACTTTC
TGGCCATTTCTGGTTGATTCTCTTTGTTACTGAAACTTCTGAGAAATAGTACCTGTGGAT
TAGTTTTGCACAATGTTCTATTCTCACAATAACTTACAAATTAAACTAGGTTTTTATTGA
ACTACCTCACACTAATTTTCTATGCTTTCCCAAGTAAGCAGTTGCCCTTACTGTTAGATC
TTCACTGAGTGTGAATTATAAATGTGTGTTAAATACTTTATAGCCAATGTTGACACAATA
CCAGTAAGTATGTAAAATATATACCTTGCATCAGTAAGAGAGACTCACTTGTAAAATCTT
TCACTGTATATCTTGGAAAGTTGTGTTAGATGTGCTCGTTGGACATTATTACTGTCTGTT
TTTGTAAGTAGAAACCTGCTCGTGATATCAGTCCATTCTTTACATTTTGCAAAAGGAATA
AATCTTAGTAAATTTTACGAAGAAATAAATTACTTTTGTAGGCTTGAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CACATTAGCTGTAGAGTGAATGCATGACGCCCCATGACCCCAGTAAAATCTTACCGGTAG
AAAAACCAAGCGCCACTGTTCTGTCATTAGCAGCCCTCTTAAATGTTGCCTCCAGATCCT
TTACATTTTAGCATACATTGTGTTTCTACTGATCTCTCTTAGATTTTTCCTGAATCGGAG
GAAACTATTTTTTCCTTAATAGCAGGAAAGATGAAGAGGTGAAGGGCATTGAAGCAGAAA
TGTATAGTTTGGGGTACGATTTGAAAAAACTGGTAAGGAAAACAAACGTCCTAATTAATT
TCAAGCTAACTGCTCTTAGTTAAGTGCTCTTAAGGAGAGTCTAGTAAGAGTAACACTTTC
TGGCCATTTCTGGTTGATTCTCTTTGTTACTGAAACTTCTGAGAAATAGTACCTGTGGAT
TAGTTTTGCACAATGTTCTATTCTCACAATAACTTACAAATTAAACTAGGTTTTTATTGA
ACTACCTCACACTAATTTTCTATGCTTTCCCAAGTAAGCAGTTGCCCTTACTGTTAGATC
TTCACTGAGTGTGAATTATAAATGTGTGTTAAATACTTTATAGCCAATGTTGACACAATA
CCAGTAAGTATGTAAAATATATACCTTGCATCAGTAAGAGAGACTCACTTGTAAAATCTT
TCACTGTATATCTTGGAAAGTTGTGTTAGATGTGCTCGTTGGACATTATTACTGTCTGTT
TTTGTAAGTAGAAACCTGCTCGTGATATCAGTCCATTCTTTACATTTTGCAAAAGGAATA
AATCTTAGTAAATTTTACGAAGAAATAAATTACTTTTGTAGGCTTGAT

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-823, gnl|bosTau2|chr28 (32741927-32741114)
               

               
               1-823, gnl|Hg17|chr10 (49316197-49316993)
               

               
               1-823, gnl|Mm7|chr14 (30808859-30808054)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-823, gnl|bosTau2|chr28 (32741927-32741114)
               

               
               1-823, gnl|Hg17|chr10 (49316197-49316993)
               

               
               1-823, gnl|Mm7|chr14 (30808859-30808054)

Expressed library(ies): 6 entry(ies)

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Expressed library(ies): 6 entry(ies)

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               ece (0.229305)
               

               
               aor (0.195274)
               

               
               pla (0.133672)
               

               
               bla (0.124347)
               

               
               tra (0.123092)
               

               
               ecc (0.115035)

Expressed library(ies): 6 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ece (0.229305)
               

               
               aor (0.195274)
               

               
               pla (0.133672)
               

               
               bla (0.124347)
               

               
               tra (0.123092)
               

               
               ecc (0.115035)

	1-823, gnl\|bosTau2\|chr28 (32741927-32741114)
	1-823, gnl\|Hg17\|chr10 (49316197-49316993)
	1-823, gnl\|Mm7\|chr14 (30808859-30808054)

	ece (0.229305)
	aor (0.195274)
	pla (0.133672)
	bla (0.124347)
	tra (0.123092)
	ecc (0.115035)