Non-Coding RNA Search

Ss1.1-Pig3-SRG8026D15.5

Sequence:


               
               AGCTGTGCTGCACACAGCGGCTCGGGGAGGGCAGGAAAGCCACTCTGCTCGGACCAGCCT
CGGGAGCCAAGTCAGATCTTCAAGTGAGCCTCGGGCTTTGGGAACTGAAGAGTGTGTCTG
AAAAACCCACCCAGCATTCCAATGGCCAGCAACAATACCGCCAGCATAGCACAAGCCAGG
AAACTGGTAGAACAGCTGAAGATGGAAGCCAACATCGATAGGATAAAGGTGTCCAAGGCA
GCTGCAGACTTGATGGCCTACTGCGAAGCGCATGCCAAGGAAGATCCCCTCCTGACACCT
GTCCCGGCTTCAGAGAACCCATTTAGGGAGAAGAAGTTTTTCTGTGCTATCCTTTAAGTC
TTCAAGGGGAGTCTGAGGAGCCTCGGGGCTCCAGGGACACTGATGTAGAGTTTTTAGCAG
AGTGGGCGCCTTTCTCGTCCACAGCATTTAAAGAGAGGGAGGTGAACCATCCTGGAAACT
CCAGGCTATGCATGTTTAAAGAACCGGTCCCCTTTATGAGAATGAAAGCTGATCCACACC
CCGAGTTAAGAGATCTCAATGTCTGCAGAACTGCCTGGAGGAGGGGAAAATGTAAAGATA
AAAATCGGTGTCATTTCTTTCCTGCTGTCCCTCCCCAAACCTTATGTTTCTGCTTCATAT
TTAAAAAATAAAAATTAAAACAGACAGCTGTGCTGAGCTCAGATATGTCTGACCTTGGAA
TGAATATTGCCTTTAGAACACCCTTTGACAAGCTGAGTTGTCCAGTGTAGCCGGTTCGGT
TCAACGGCATTGATGTTTCGTCTTTGTGCCTTTCTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGCTGTGCTGCACACAGCGGCTCGGGGAGGGCAGGAAAGCCACTCTGCTCGGACCAGCCT
CGGGAGCCAAGTCAGATCTTCAAGTGAGCCTCGGGCTTTGGGAACTGAAGAGTGTGTCTG
AAAAACCCACCCAGCATTCCAATGGCCAGCAACAATACCGCCAGCATAGCACAAGCCAGG
AAACTGGTAGAACAGCTGAAGATGGAAGCCAACATCGATAGGATAAAGGTGTCCAAGGCA
GCTGCAGACTTGATGGCCTACTGCGAAGCGCATGCCAAGGAAGATCCCCTCCTGACACCT
GTCCCGGCTTCAGAGAACCCATTTAGGGAGAAGAAGTTTTTCTGTGCTATCCTTTAAGTC
TTCAAGGGGAGTCTGAGGAGCCTCGGGGCTCCAGGGACACTGATGTAGAGTTTTTAGCAG
AGTGGGCGCCTTTCTCGTCCACAGCATTTAAAGAGAGGGAGGTGAACCATCCTGGAAACT
CCAGGCTATGCATGTTTAAAGAACCGGTCCCCTTTATGAGAATGAAAGCTGATCCACACC
CCGAGTTAAGAGATCTCAATGTCTGCAGAACTGCCTGGAGGAGGGGAAAATGTAAAGATA
AAAATCGGTGTCATTTCTTTCCTGCTGTCCCTCCCCAAACCTTATGTTTCTGCTTCATAT
TTAAAAAATAAAAATTAAAACAGACAGCTGTGCTGAGCTCAGATATGTCTGACCTTGGAA
TGAATATTGCCTTTAGAACACCCTTTGACAAGCTGAGTTGTCCAGTGTAGCCGGTTCGGT
TCAACGGCATTGATGTTTCGTCTTTGTGCCTTTCTT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|6754020|ref|NP_034445.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|6754020|ref|NP_034445.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               306-465, + strand, RNAz p=0.60413

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               306-465, + strand, RNAz p=0.60413

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_053064, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_053064, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               227-813, gnl|bosTau2|chr10 (29720370-29719778)
               

               
               227-813, gnl|Hg17|chr14 (51503025-51503630)
               

               
               227-813, gnl|Mm7|chr14 (17533919-17533338)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               227-813, gnl|bosTau2|chr10 (29720370-29719778)
               

               
               227-813, gnl|Hg17|chr14 (51503025-51503630)
               

               
               227-813, gnl|Mm7|chr14 (17533919-17533338)

Expressed library(ies): 10 entry(ies)

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Expressed library(ies): 10 entry(ies)

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               csp (0.322373)
               

               
               sug (0.254582)
               

               
               ece (0.229305)
               

               
               cag (0.151194)
               

               
               hyp (0.142837)
               

               
               cov (0.132153)
               

               
               tra (0.123092)
               

               
               med (0.116252)
               

               
               nbm (0.0993246)
               

               
               eje (0.0988338)

Expressed library(ies): 10 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               csp (0.322373)
               

               
               sug (0.254582)
               

               
               ece (0.229305)
               

               
               cag (0.151194)
               

               
               hyp (0.142837)
               

               
               cov (0.132153)
               

               
               tra (0.123092)
               

               
               med (0.116252)
               

               
               nbm (0.0993246)
               

               
               eje (0.0988338)

	227-813, gnl\|bosTau2\|chr10 (29720370-29719778)
	227-813, gnl\|Hg17\|chr14 (51503025-51503630)
	227-813, gnl\|Mm7\|chr14 (17533919-17533338)

	csp (0.322373)
	sug (0.254582)
	ece (0.229305)
	cag (0.151194)
	hyp (0.142837)
	cov (0.132153)
	tra (0.123092)
	med (0.116252)
	nbm (0.0993246)
	eje (0.0988338)