Non-Coding RNA Search

Ss1.1-Pig3-SRG8026E10.3

Sequence:


               
               GTATAATTCTATAGTTAGTGTATTATTTGCAACATAAATACTGTATTTCCTTCATCAAAT
GATTGTAGATTATATTTACTTTAATCAGACTCATACTCTTAGAAGGCAGTTAAATTATTC
CCCTCCACCCCCCGCCGCCCCGGGGCCCGAACCTGTTCTCTCCAAGGGTCTTGTTTAAAG
GTTCCAGACCACATGTGTTTGTACCATCAAGAGTTCCTGCTGTGGCACAATGGCTTAAGG
ATCTGGCGTTGCCACTTTGGGGTAGGTCTCAGCTGTGGCTCAGATTCATCCCTGGCCTGG
GAACTTCCATATGCCACAGGTGCTGCCAAAAAAAGAAAATAAAGGGAGAGGGAACCTTTG
CCACAGGAATTGATGTCCCACTTAAGCATTATTAAGTCTGTAGTAAGAGGAAGAATTGGG
GTGGACTGGCCTCTTGATGCTGGAAGACCAGCTTGACTGAAAAATTAGAACTGGGATGGA
GCTTTTTAGAGGAAGATCTCTCAATAAGAGATTCCTGCTCATCCTTTTCTGTTTCTCTTT
TACTTAGCAAAGCTTTTTGTTTGTTTGTTTAATGTAGCTTTTTAAAAAATTCTACATGTG
GGAAGCATAACTAATATCCGATATAGGAAAATTTACCAAAATATAGAAGCAAAAATAAGA
ACGTTAGAATAATCTCTAATCCTACCACCTAGGATAAAACACGATCCATATTGTGGGAGT
CTTTCCGTCCAAGGTGTTTTCTTTATATGCACAGATGTTTTGTTTGCTTGTTGTTGAACA
AACTGTGGGATCAATTTTGACCATACTGTTTTATCGTATGGTCAGCTAATATGTCAAACT
CTTTTCCATGTTATTAAATGCAACATTTTTAAATGGCTGTTTATTCTGTTGTATAGACGT
GCTGTAATATGCTCGGCGGTTGTCTCTCGAAAAGGAAAACAGCAAAGACTTTTTATCACA
AAAGTATTCAGTGTTCATTGTAGAAAATGCAACAGAAATTGGTAAACTAAAAAGAGACTT
AAAAAGCCTTATAACTCTACCAACCAAAAATAATCCCTGTTATCATTTTTATAGGTATCT
TTCTGCTCTTCTGTCTCTGTGTTTATAATAGTGATTGTCTTTTGAGTTTTTTTCCTCTTG
TTTTTTACTTTAAAACATGTACCTGGCAGGGTCAGGGGAAATGTAATGTGGAATTAAATG
TTAGCTTTGAAATTCACAGTTTGGCTTTTCCTGGCTCTTTAGGAATTGACTAACTATAGT
ATCTCTTGTAGTTAATCAATAAAAAGACAGTGTATGTTTTTTTTTTTCTTAAATTATAAA
AGCTCATTGTAGAAAGTGTGTGGAAAGTATAGAAAATTATTAGAAGCAGAGACAGTTGTT
AACGTTCTTGTTTATTTCCTTCCCGTTTTTTCGTTAATAACATTGAGAGCTTATTGAATT
TTGTTGTGTTTGATTTAATATATCATTAATGCTTTGACTGTTATAAGAATTCTAAATAAA
TTATTTGTAATTCCAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTATAATTCTATAGTTAGTGTATTATTTGCAACATAAATACTGTATTTCCTTCATCAAAT
GATTGTAGATTATATTTACTTTAATCAGACTCATACTCTTAGAAGGCAGTTAAATTATTC
CCCTCCACCCCCCGCCGCCCCGGGGCCCGAACCTGTTCTCTCCAAGGGTCTTGTTTAAAG
GTTCCAGACCACATGTGTTTGTACCATCAAGAGTTCCTGCTGTGGCACAATGGCTTAAGG
ATCTGGCGTTGCCACTTTGGGGTAGGTCTCAGCTGTGGCTCAGATTCATCCCTGGCCTGG
GAACTTCCATATGCCACAGGTGCTGCCAAAAAAAGAAAATAAAGGGAGAGGGAACCTTTG
CCACAGGAATTGATGTCCCACTTAAGCATTATTAAGTCTGTAGTAAGAGGAAGAATTGGG
GTGGACTGGCCTCTTGATGCTGGAAGACCAGCTTGACTGAAAAATTAGAACTGGGATGGA
GCTTTTTAGAGGAAGATCTCTCAATAAGAGATTCCTGCTCATCCTTTTCTGTTTCTCTTT
TACTTAGCAAAGCTTTTTGTTTGTTTGTTTAATGTAGCTTTTTAAAAAATTCTACATGTG
GGAAGCATAACTAATATCCGATATAGGAAAATTTACCAAAATATAGAAGCAAAAATAAGA
ACGTTAGAATAATCTCTAATCCTACCACCTAGGATAAAACACGATCCATATTGTGGGAGT
CTTTCCGTCCAAGGTGTTTTCTTTATATGCACAGATGTTTTGTTTGCTTGTTGTTGAACA
AACTGTGGGATCAATTTTGACCATACTGTTTTATCGTATGGTCAGCTAATATGTCAAACT
CTTTTCCATGTTATTAAATGCAACATTTTTAAATGGCTGTTTATTCTGTTGTATAGACGT
GCTGTAATATGCTCGGCGGTTGTCTCTCGAAAAGGAAAACAGCAAAGACTTTTTATCACA
AAAGTATTCAGTGTTCATTGTAGAAAATGCAACAGAAATTGGTAAACTAAAAAGAGACTT
AAAAAGCCTTATAACTCTACCAACCAAAAATAATCCCTGTTATCATTTTTATAGGTATCT
TTCTGCTCTTCTGTCTCTGTGTTTATAATAGTGATTGTCTTTTGAGTTTTTTTCCTCTTG
TTTTTTACTTTAAAACATGTACCTGGCAGGGTCAGGGGAAATGTAATGTGGAATTAAATG
TTAGCTTTGAAATTCACAGTTTGGCTTTTCCTGGCTCTTTAGGAATTGACTAACTATAGT
ATCTCTTGTAGTTAATCAATAAAAAGACAGTGTATGTTTTTTTTTTTCTTAAATTATAAA
AGCTCATTGTAGAAAGTGTGTGGAAAGTATAGAAAATTATTAGAAGCAGAGACAGTTGTT
AACGTTCTTGTTTATTTCCTTCCCGTTTTTTCGTTAATAACATTGAGAGCTTATTGAATT
TTGTTGTGTTTGATTTAATATATCATTAATGCTTTGACTGTTATAAGAATTCTAAATAAA
TTATTTGTAATTCCAAAAAAAAAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               347-933, gnl|bosTau2|chr11 (75294652-75294040)
               

               
               347-933, gnl|Hg17|chr9 (122661395-122660777)
               

               
               347-933, gnl|Mm7|chr2 (37358541-37357974)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               347-933, gnl|bosTau2|chr11 (75294652-75294040)
               

               
               347-933, gnl|Hg17|chr9 (122661395-122660777)
               

               
               347-933, gnl|Mm7|chr2 (37358541-37357974)

Expressed library(ies): 19 entry(ies)

More info

Expressed library(ies): 19 entry(ies)

Help | Less info


               
               eye (0.511509)
               

               
               ret (0.257467)
               

               
               mgp (0.230681)
               

               
               sin (0.174948)
               

               
               fhi (0.169578)
               

               
               mga (0.160205)
               

               
               fco (0.157208)
               

               
               eli (0.151814)
               

               
               fat (0.147427)
               

               
               liv (0.146284)
               

               
               hyp (0.142837)
               

               
               kid (0.129735)
               

               
               bla (0.124347)
               

               
               tra (0.123092)
               

               
               pgl (0.118483)
               

               
               spc (0.113366)
               

               
               nbm (0.0993246)
               

               
               jej (0.0989218)
               

               
               eje (0.0988338)

Expressed library(ies): 19 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eye (0.511509)
               

               
               ret (0.257467)
               

               
               mgp (0.230681)
               

               
               sin (0.174948)
               

               
               fhi (0.169578)
               

               
               mga (0.160205)
               

               
               fco (0.157208)
               

               
               eli (0.151814)
               

               
               fat (0.147427)
               

               
               liv (0.146284)
               

               
               hyp (0.142837)
               

               
               kid (0.129735)
               

               
               bla (0.124347)
               

               
               tra (0.123092)
               

               
               pgl (0.118483)
               

               
               spc (0.113366)
               

               
               nbm (0.0993246)
               

               
               jej (0.0989218)
               

               
               eje (0.0988338)

	347-933, gnl\|bosTau2\|chr11 (75294652-75294040)
	347-933, gnl\|Hg17\|chr9 (122661395-122660777)
	347-933, gnl\|Mm7\|chr2 (37358541-37357974)

	eye (0.511509)
	ret (0.257467)
	mgp (0.230681)
	sin (0.174948)
	fhi (0.169578)
	mga (0.160205)
	fco (0.157208)
	eli (0.151814)
	fat (0.147427)
	liv (0.146284)
	hyp (0.142837)
	kid (0.129735)
	bla (0.124347)
	tra (0.123092)
	pgl (0.118483)
	spc (0.113366)
	nbm (0.0993246)
	jej (0.0989218)
	eje (0.0988338)