Non-Coding RNA Search

Ss1.1-Pig3-SRG8026E11.3

Sequence:


               
               GTGAGGCGGAGGAGGAGTCAACGTATTTCGCAGCGTATTACGTAAAATGATTTTTATGTG
CTTATATATGTCAGTCTATTAAATGTACACCAAGTAATGTAATACTTATGAGAAAAAACA
TTTTTGTAGATAGAGATTCTCTACTTATCCATTTATACAACCTTTTGTAGAAAGTTTAAC
ATAAAAGACAATAAAAAAAAAACAGAAATGAGATTTATCCAGCATAAAGGGTTATTAATT
TTTCTTTGGACTGTATTAATGTGTGTTATCCTTTTTTATTGTTGCTAAGTTTTATGTAGC
TTTATGGTTCATATGTATATATAATTTTATATATCAATAAGAGTAAAGACACGGGTACAA
ATTAAGAGTTACGTGGTTTTACAAGTATATGTTAACCCCTTGGCGCTGGCGGTCACGGTG
CGTCTCATTGCCTAGCACAAATGCTCGAAACAAAGCAATTACCTCGCTGCTTGGAGGAGG
CAGCCCTAAAAATAATGCAGCAGCAGAGACAGAAGATGATGAAAGTGATGGGGAGGATAG
AGGAGGAGGCACGTTTTAGTCATTGAGAAGGTCAAAACGAAATTCAGACTCTACGGAGTT
GGCAGCACAGATGAATGAAAGTGTTGACGTCATGGATGTCATCGCTATTTGCTGTCCAAA
GTACAAAGATCGACCACAAATTGCAAGAGTAGTACAGAAAACCAGCAATGGCTTCAGTGT
TCAGTGGATGGCAGGCTCCTACAGTGGCTCCTGGACTGAGGCTAAGCGCCGTGATGGCCG
CAAACTGGTGCCTTGGGTAGACACTATTAAAGAGTCAGACATTATTTACAAAAAAATTGC
TCTAACGAGTGCTAATAAGCTGACTAATAAAGTTGTTCAGACTTTACGATCCCTGTATGC
CGCCAAGGATGGGACTTCCAGCTAATGAATTTGTACATGCAGCCAAATTTACAGGAGTTT
TTTTAAAGGCAGAAAAACTTGAAATATCAACATTCTGGCAAAAAAAAAAAAAAAAAAAAA
AAAAGGGGGGGGGCCCTTTTAAAATTTTCCTGGGGGGGCCCAATTTTTCCCCCCCCCATT
TTTTTTGAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTGAGGCGGAGGAGGAGTCAACGTATTTCGCAGCGTATTACGTAAAATGATTTTTATGTG
CTTATATATGTCAGTCTATTAAATGTACACCAAGTAATGTAATACTTATGAGAAAAAACA
TTTTTGTAGATAGAGATTCTCTACTTATCCATTTATACAACCTTTTGTAGAAAGTTTAAC
ATAAAAGACAATAAAAAAAAAACAGAAATGAGATTTATCCAGCATAAAGGGTTATTAATT
TTTCTTTGGACTGTATTAATGTGTGTTATCCTTTTTTATTGTTGCTAAGTTTTATGTAGC
TTTATGGTTCATATGTATATATAATTTTATATATCAATAAGAGTAAAGACACGGGTACAA
ATTAAGAGTTACGTGGTTTTACAAGTATATGTTAACCCCTTGGCGCTGGCGGTCACGGTG
CGTCTCATTGCCTAGCACAAATGCTCGAAACAAAGCAATTACCTCGCTGCTTGGAGGAGG
CAGCCCTAAAAATAATGCAGCAGCAGAGACAGAAGATGATGAAAGTGATGGGGAGGATAG
AGGAGGAGGCACGTTTTAGTCATTGAGAAGGTCAAAACGAAATTCAGACTCTACGGAGTT
GGCAGCACAGATGAATGAAAGTGTTGACGTCATGGATGTCATCGCTATTTGCTGTCCAAA
GTACAAAGATCGACCACAAATTGCAAGAGTAGTACAGAAAACCAGCAATGGCTTCAGTGT
TCAGTGGATGGCAGGCTCCTACAGTGGCTCCTGGACTGAGGCTAAGCGCCGTGATGGCCG
CAAACTGGTGCCTTGGGTAGACACTATTAAAGAGTCAGACATTATTTACAAAAAAATTGC
TCTAACGAGTGCTAATAAGCTGACTAATAAAGTTGTTCAGACTTTACGATCCCTGTATGC
CGCCAAGGATGGGACTTCCAGCTAATGAATTTGTACATGCAGCCAAATTTACAGGAGTTT
TTTTAAAGGCAGAAAAACTTGAAATATCAACATTCTGGCAAAAAAAAAAAAAAAAAAAAA
AAAAGGGGGGGGGCCCTTTTAAAATTTTCCTGGGGGGGCCCAATTTTTCCCCCCCCCATT
TTTTTTGAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|33416998|gb|AAH55787.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|33416998|gb|AAH55787.1|

Predicted RNA structure(s): 4 entry(ies)

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Predicted RNA structure(s): 4 entry(ies)

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               870-983, + strand, RNAz p=0.708157
               

               
               870-983, - strand, RNAz p=0.708157
               

               
               870-1019, + strand, RNAz p=0.97244
               

               
               870-1019, - strand, RNAz p=0.97244

Predicted RNA structure(s): 4 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               870-983, + strand, RNAz p=0.708157
               

               
               870-983, - strand, RNAz p=0.708157
               

               
               870-1019, + strand, RNAz p=0.97244
               

               
               870-1019, - strand, RNAz p=0.97244

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_133433, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_133433, +

Aligned organism(s): 18 entry(ies)

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Aligned organism(s): 18 entry(ies)

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               591-1019, gnl|bosTau2|chr20 (24594842-24595270)
               

               
               591-1019, gnl|canFam2|chr4 (74781550-74781258)
               

               
               591-1019, gnl|danRer3|chr10 (33932541-33932249)
               

               
               591-1019, gnl|dasNov1|scaffold_23169 (46619-46327)
               

               
               591-1019, gnl|echTel1|scaffold_325340 (53134-52842)
               

               
               591-1019, gnl|fr1|chrUn (250253955-250254244)
               

               
               591-1019, gnl|galGal2|chrZ_random (10451956-10452248)
               

               
               591-1019, gnl|hg17|chr5 (37100418-37100710)
               

               
               591-1019, gnl|Hg17|chr5 (37100417-37100835)
               

               
               591-1019, gnl|loxAfr1|scaffold_12617 (11421-11129)
               

               
               591-1019, gnl|mm7|chr15 (8118389-8118097)
               

               
               591-1019, gnl|Mm7|chr15 (8118388-8117965)
               

               
               591-1019, gnl|monDom2|scaffold_20 (35121382-35121090)
               

               
               591-1019, gnl|oryCun1|scaffold_199819 (10781-10489)
               

               
               591-1019, gnl|rheMac2|chr6 (36888278-36888570)
               

               
               591-1019, gnl|rn3|chr2 (57838780-57838488)
               

               
               591-1019, gnl|tetNig1|chr4 (2180081-2179789)
               

               
               591-1019, gnl|xenTro1|scaffold_363 (971602-971310)

Aligned organism(s): 18 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               591-1019, gnl|bosTau2|chr20 (24594842-24595270)
               

               
               591-1019, gnl|canFam2|chr4 (74781550-74781258)
               

               
               591-1019, gnl|danRer3|chr10 (33932541-33932249)
               

               
               591-1019, gnl|dasNov1|scaffold_23169 (46619-46327)
               

               
               591-1019, gnl|echTel1|scaffold_325340 (53134-52842)
               

               
               591-1019, gnl|fr1|chrUn (250253955-250254244)
               

               
               591-1019, gnl|galGal2|chrZ_random (10451956-10452248)
               

               
               591-1019, gnl|hg17|chr5 (37100418-37100710)
               

               
               591-1019, gnl|Hg17|chr5 (37100417-37100835)
               

               
               591-1019, gnl|loxAfr1|scaffold_12617 (11421-11129)
               

               
               591-1019, gnl|mm7|chr15 (8118389-8118097)
               

               
               591-1019, gnl|Mm7|chr15 (8118388-8117965)
               

               
               591-1019, gnl|monDom2|scaffold_20 (35121382-35121090)
               

               
               591-1019, gnl|oryCun1|scaffold_199819 (10781-10489)
               

               
               591-1019, gnl|rheMac2|chr6 (36888278-36888570)
               

               
               591-1019, gnl|rn3|chr2 (57838780-57838488)
               

               
               591-1019, gnl|tetNig1|chr4 (2180081-2179789)
               

               
               591-1019, gnl|xenTro1|scaffold_363 (971602-971310)

Expressed library(ies): 13 entry(ies)

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Expressed library(ies): 13 entry(ies)

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               sag (0.36543)
               

               
               csk (0.281492)
               

               
               kid (0.259471)
               

               
               thg (0.253582)
               

               
               gul (0.177588)
               

               
               fbs (0.175346)
               

               
               sin (0.174948)
               

               
               duo (0.172801)
               

               
               liv (0.146284)
               

               
               lyg (0.133103)
               

               
               ova (0.129132)
               

               
               bla (0.124347)
               

               
               jej (0.0989218)

Expressed library(ies): 13 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sag (0.36543)
               

               
               csk (0.281492)
               

               
               kid (0.259471)
               

               
               thg (0.253582)
               

               
               gul (0.177588)
               

               
               fbs (0.175346)
               

               
               sin (0.174948)
               

               
               duo (0.172801)
               

               
               liv (0.146284)
               

               
               lyg (0.133103)
               

               
               ova (0.129132)
               

               
               bla (0.124347)
               

               
               jej (0.0989218)

	870-983, + strand, RNAz p=0.708157
	870-983, - strand, RNAz p=0.708157
	870-1019, + strand, RNAz p=0.97244
	870-1019, - strand, RNAz p=0.97244

	591-1019, gnl\|bosTau2\|chr20 (24594842-24595270)
	591-1019, gnl\|canFam2\|chr4 (74781550-74781258)
	591-1019, gnl\|danRer3\|chr10 (33932541-33932249)
	591-1019, gnl\|dasNov1\|scaffold_23169 (46619-46327)
	591-1019, gnl\|echTel1\|scaffold_325340 (53134-52842)
	591-1019, gnl\|fr1\|chrUn (250253955-250254244)
	591-1019, gnl\|galGal2\|chrZ_random (10451956-10452248)
	591-1019, gnl\|hg17\|chr5 (37100418-37100710)
	591-1019, gnl\|Hg17\|chr5 (37100417-37100835)
	591-1019, gnl\|loxAfr1\|scaffold_12617 (11421-11129)
	591-1019, gnl\|mm7\|chr15 (8118389-8118097)
	591-1019, gnl\|Mm7\|chr15 (8118388-8117965)
	591-1019, gnl\|monDom2\|scaffold_20 (35121382-35121090)
	591-1019, gnl\|oryCun1\|scaffold_199819 (10781-10489)
	591-1019, gnl\|rheMac2\|chr6 (36888278-36888570)
	591-1019, gnl\|rn3\|chr2 (57838780-57838488)
	591-1019, gnl\|tetNig1\|chr4 (2180081-2179789)
	591-1019, gnl\|xenTro1\|scaffold_363 (971602-971310)

	sag (0.36543)
	csk (0.281492)
	kid (0.259471)
	thg (0.253582)
	gul (0.177588)
	fbs (0.175346)
	sin (0.174948)
	duo (0.172801)
	liv (0.146284)
	lyg (0.133103)
	ova (0.129132)
	bla (0.124347)
	jej (0.0989218)