Ss1.1-Pig3-SRG8026E14.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CATTGCTCAAAGATCTAGCTGCTGCCTTTCCCAGCTCAGGCTCCAAAATGGGGAAATCCT TCGCCAATTTCATGTGCAAGAAGGACTTTCATCCTGCCTCCAAATCCAACATCAAAAAAG TATGGATGGCAGAACAGAAAATATCATATGATAAGAAGAAACAAGAAGAATTAATGCAGC AGTATCTTAAAGAGCAAGAATCATATGATAACAGATTGCTTATGGGAGATGAACGTGTAA AGAATGGCCTTAATTTCATGTATGAGGCTCCACCAGGGGCTAAGAAAGAAAACAAAGAGA AAGAAGAAACAGAAGGAGAGACCGAATACAAATTTGAATGGCAGAAAGGAGCCCCACGAG AAAAATATGCCAAAGATGACATGAACATCAGAGATCAGCCCTTTGGTATTCAGGTTCGAA ATGTGAGGTGCATTAAATGTCACAAATGGGGTCATGTCAACACAGATCGAGAATGTCCTT TGTTTGGTCTTTCTGGAATTAATGCAAGTTCAGTTCCCACTGATGGCTCAGGGCCATCGA TGCACCCCTCGGAGCTAATAGCGGAGATGAGAAACAGTGGGTTTGCACTGAAACGAAATG TACTGGGGAGAAACTTGACCGCAAATGATCCATCACAGGAATATGTTGCAAGCGAGGGTG AAGAAGATCCAGAAGTTGAATTTTTAAAGTCACTGACAACAAAACAAAAACAGAAACTTC TCAGGAAGCTGGATCGACTTGAGAAGAAAAAAAAGAAAAAGAAAAAAGATAGAACAAAGA AAAAGCTTCAGAAGAGCAGAAGTA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CATTGCTCAAAGATCTAGCTGCTGCCTTTCCCAGCTCAGGCTCCAAAATGGGGAAATCCT TCGCCAATTTCATGTGCAAGAAGGACTTTCATCCTGCCTCCAAATCCAACATCAAAAAAG TATGGATGGCAGAACAGAAAATATCATATGATAAGAAGAAACAAGAAGAATTAATGCAGC AGTATCTTAAAGAGCAAGAATCATATGATAACAGATTGCTTATGGGAGATGAACGTGTAA AGAATGGCCTTAATTTCATGTATGAGGCTCCACCAGGGGCTAAGAAAGAAAACAAAGAGA AAGAAGAAACAGAAGGAGAGACCGAATACAAATTTGAATGGCAGAAAGGAGCCCCACGAG AAAAATATGCCAAAGATGACATGAACATCAGAGATCAGCCCTTTGGTATTCAGGTTCGAA ATGTGAGGTGCATTAAATGTCACAAATGGGGTCATGTCAACACAGATCGAGAATGTCCTT TGTTTGGTCTTTCTGGAATTAATGCAAGTTCAGTTCCCACTGATGGCTCAGGGCCATCGA TGCACCCCTCGGAGCTAATAGCGGAGATGAGAAACAGTGGGTTTGCACTGAAACGAAATG TACTGGGGAGAAACTTGACCGCAAATGATCCATCACAGGAATATGTTGCAAGCGAGGGTG AAGAAGATCCAGAAGTTGAATTTTTAAAGTCACTGACAACAAAACAAAAACAGAAACTTC TCAGGAAGCTGGATCGACTTGAGAAGAAAAAAAAGAAAAAGAAAAAAGATAGAACAAAGA AAAAGCTTCAGAAGAGCAGAAGTA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 103 entry(ies) | More info |
| Aligned organism(s): 103 entry(ies) | Help | Less info |
| 3-121, gnl|bosTau2|chr2 (14426670-14426552) | |
| 3-121, gnl|canFam2|chr36 (21478541-21478622) | |
| 3-121, gnl|canFam2|chr36 (21478545-21478639) | |
| 3-121, gnl|canFam2|chr36 (21478545-21478621) | |
| 3-121, gnl|danRer3|chr21 (32989727-32989648) | |
| 3-121, gnl|danRer3|chr21 (32989724-32989648) | |
| 3-121, gnl|dasNov1|scaffold_115864 (1294-1375) | |
| 3-121, gnl|dasNov1|scaffold_115864 (1298-1392) | |
| 3-121, gnl|dasNov1|scaffold_115864 (1298-1374) | |
| 3-121, gnl|echTel1|scaffold_279297 (76931-77014) | |
| 3-121, gnl|echTel1|scaffold_304591 (1274-1175) | |
| 3-121, gnl|echTel1|scaffold_304591 (1274-1198) | |
| 3-121, gnl|galGal2|chrUn (153028194-153028117) | |
| 3-121, gnl|hg17|chr2 (175085781-175085862) | |
| 3-121, gnl|Hg17|chr2 (175085902-175085784) | |
| 3-121, gnl|hg17|chr4 (115993607-115993708) | |
| 3-121, gnl|hg17|chr5 (153920121-153920197) | |
| 3-121, gnl|loxAfr1|scaffold_37461 (1564-1663) | |
| 3-121, gnl|loxAfr1|scaffold_37461 (1564-1640) | |
| 3-121, gnl|loxAfr1|scaffold_39528 (12939-12858) | |
| 3-121, gnl|mm7|chr2 (73156128-73156209) | |
| 3-121, gnl|mm7|chr2 (97800323-97800421) | |
| 3-121, gnl|mm7|chr2 (97800323-97800399) | |
| 3-121, gnl|Mm7|chr2 (73156249-73156131) | |
| 3-121, gnl|monDom2|scaffold_2 (73953344-73953425) | |
| 3-121, gnl|monDom2|scaffold_46 (1870298-1870212) | |
| 3-121, gnl|monDom2|scaffold_46 (1870298-1870221) | |
| 3-121, gnl|oryCun1|scaffold_177151 (15397-15478) | |
| 3-121, gnl|oryCun1|scaffold_93023 (9235-9316) | |
| 3-121, gnl|oryCun1|scaffold_93023 (9235-9295) | |
| 3-121, gnl|panTro1|chr13_random (19500495-19500576) | |
| 3-121, gnl|panTro1|chr3 (132672859-132672960) | |
| 3-121, gnl|panTro1|chr4 (160843558-160843634) | |
| 3-121, gnl|rheMac2|chr12 (38018776-38018857) | |
| 3-121, gnl|rheMac2|chr5 (107596350-107596450) | |
| 3-121, gnl|rheMac2|chr6 (150931459-150931535) | |
| 3-121, gnl|rn3|chr17 (5536438-5536536) | |
| 3-121, gnl|rn3|chr17 (5536438-5536514) | |
| 3-121, gnl|rn3|chr3 (55714930-55715011) | |
| 3-121, gnl|tetNig1|chr2 (11251800-11251723) | |
| 3-121, gnl|tetNig1|chr2 (11251796-11251723) | |
| 3-121, gnl|tetNig1|chr2 (11251796-11251723) | |
| 3-121, gnl|xenTro1|scaffold_65 (707869-707788) | |
| 3-121, gnl|xenTro1|scaffold_65 (710413-710364) | |
| 410-532, gnl|bosTau2|chr2 (14412781-14412659) | |
| 410-532, gnl|canFam2|chr36 (21465278-21465407) | |
| 410-532, gnl|canFam2|chr36 (21465402-21465280) | |
| 410-532, gnl|canFam2|chr36 (21465284-21465397) | |
| 410-532, gnl|canFam2|chr36 (21465284-21465397) | |
| 410-532, gnl|danRer3|chr21 (32995397-32995275) | |
| 410-532, gnl|danRer3|chr21 (32995275-32995395) | |
| 410-532, gnl|danRer3|chr21 (32995391-32995278) | |
| 410-532, gnl|dasNov1|scaffold_168387 (2638-2509) | |
| 410-532, gnl|dasNov1|scaffold_168387 (2515-2636) | |
| 410-532, gnl|dasNov1|scaffold_168387 (2632-2519) | |
| 410-532, gnl|dasNov1|scaffold_168387 (2632-2519) | |
| 410-532, gnl|echTel1|scaffold_304591 (1563-1685) | |
| 410-532, gnl|echTel1|scaffold_304591 (1681-1568) | |
| 410-532, gnl|echTel1|scaffold_304591 (1681-1568) | |
| 410-532, gnl|echTel1|scaffold_8973 (588-718) | |
| 410-532, gnl|galGal2|chrUn (153032225-153032096) | |
| 410-532, gnl|hg17|chr11 (34409650-34409772) | |
| 410-532, gnl|hg17|chr2 (175069156-175069285) | |
| 410-532, gnl|Hg17|chr2 (175069279-175069157) | |
| 410-532, gnl|hg17|chr4 (115993201-115993314) | |
| 410-532, gnl|hg17|chr5 (153919714-153919827) | |
| 410-532, gnl|loxAfr1|scaffold_37461 (1138-1257) | |
| 410-532, gnl|loxAfr1|scaffold_37461 (1262-1140) | |
| 410-532, gnl|loxAfr1|scaffold_37461 (1144-1257) | |
| 410-532, gnl|loxAfr1|scaffold_37461 (1144-1257) | |
| 410-532, gnl|mm7|chr2 (73147454-73147583) | |
| 410-532, gnl|mm7|chr2 (97800034-97799912) | |
| 410-532, gnl|mm7|chr2 (97799916-97800029) | |
| 410-532, gnl|mm7|chr2 (97799916-97800029) | |
| 410-532, gnl|Mm7|chr2 (73147577-73147455) | |
| 410-532, gnl|monDom2|scaffold_2 (73945288-73945417) | |
| 410-532, gnl|monDom2|scaffold_2 (73945412-73945290) | |
| 410-532, gnl|monDom2|scaffold_46 (1870693-1870588) | |
| 410-532, gnl|monDom2|scaffold_46 (1870693-1870588) | |
| 410-532, gnl|oryCun1|scaffold_177151 (6178-6307) | |
| 410-532, gnl|oryCun1|scaffold_177151 (6302-6180) | |
| 410-532, gnl|oryCun1|scaffold_93023 (8859-8948) | |
| 410-532, gnl|oryCun1|scaffold_93023 (8859-8948) | |
| 410-532, gnl|panTro1|chr13 (64706448-64706577) | |
| 410-532, gnl|panTro1|chr3 (132672453-132672566) | |
| 410-532, gnl|panTro1|chr4 (160843151-160843264) | |
| 410-532, gnl|panTro1|chr9 (34796043-34796165) | |
| 410-532, gnl|rheMac2|chr12 (38002012-38002141) | |
| 410-532, gnl|rheMac2|chr5 (107595940-107596053) | |
| 410-532, gnl|rheMac2|chr6 (150931173-150931051) | |
| 410-532, gnl|rheMac2|chr6 (150931055-150931168) | |
| 410-532, gnl|rn3|chr17 (5536152-5536030) | |
| 410-532, gnl|rn3|chr17 (5536034-5536147) | |
| 410-532, gnl|rn3|chr17 (5536034-5536147) | |
| 410-532, gnl|rn3|chr3 (55705361-55705493) | |
| 410-532, gnl|tetNig1|chr2 (11254285-11254159) | |
| 410-532, gnl|tetNig1|chr2 (11254164-11254285) | |
| 410-532, gnl|tetNig1|chr2 (11254273-11254169) | |
| 410-532, gnl|tetNig1|chr2 (11254282-11254169) | |
| 410-532, gnl|xenTro1|scaffold_65 (718228-718099) | |
| 410-532, gnl|xenTro1|scaffold_65 (718105-718226) | |
| 410-532, gnl|xenTro1|scaffold_65 (718222-718109) | |
| 410-532, gnl|xenTro1|scaffold_65 (718220-718109) |
| Aligned organism(s): 103 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 3-121, gnl|bosTau2|chr2 (14426670-14426552) | |
| 3-121, gnl|canFam2|chr36 (21478541-21478622) | |
| 3-121, gnl|canFam2|chr36 (21478545-21478639) | |
| 3-121, gnl|canFam2|chr36 (21478545-21478621) | |
| 3-121, gnl|danRer3|chr21 (32989727-32989648) | |
| 3-121, gnl|danRer3|chr21 (32989724-32989648) | |
| 3-121, gnl|dasNov1|scaffold_115864 (1294-1375) | |
| 3-121, gnl|dasNov1|scaffold_115864 (1298-1392) | |
| 3-121, gnl|dasNov1|scaffold_115864 (1298-1374) | |
| 3-121, gnl|echTel1|scaffold_279297 (76931-77014) | |
| 3-121, gnl|echTel1|scaffold_304591 (1274-1175) | |
| 3-121, gnl|echTel1|scaffold_304591 (1274-1198) | |
| 3-121, gnl|galGal2|chrUn (153028194-153028117) | |
| 3-121, gnl|hg17|chr2 (175085781-175085862) | |
| 3-121, gnl|Hg17|chr2 (175085902-175085784) | |
| 3-121, gnl|hg17|chr4 (115993607-115993708) | |
| 3-121, gnl|hg17|chr5 (153920121-153920197) | |
| 3-121, gnl|loxAfr1|scaffold_37461 (1564-1663) | |
| 3-121, gnl|loxAfr1|scaffold_37461 (1564-1640) | |
| 3-121, gnl|loxAfr1|scaffold_39528 (12939-12858) | |
| 3-121, gnl|mm7|chr2 (73156128-73156209) | |
| 3-121, gnl|mm7|chr2 (97800323-97800421) | |
| 3-121, gnl|mm7|chr2 (97800323-97800399) | |
| 3-121, gnl|Mm7|chr2 (73156249-73156131) | |
| 3-121, gnl|monDom2|scaffold_2 (73953344-73953425) | |
| 3-121, gnl|monDom2|scaffold_46 (1870298-1870212) | |
| 3-121, gnl|monDom2|scaffold_46 (1870298-1870221) | |
| 3-121, gnl|oryCun1|scaffold_177151 (15397-15478) | |
| 3-121, gnl|oryCun1|scaffold_93023 (9235-9316) | |
| 3-121, gnl|oryCun1|scaffold_93023 (9235-9295) | |
| 3-121, gnl|panTro1|chr13_random (19500495-19500576) | |
| 3-121, gnl|panTro1|chr3 (132672859-132672960) | |
| 3-121, gnl|panTro1|chr4 (160843558-160843634) | |
| 3-121, gnl|rheMac2|chr12 (38018776-38018857) | |
| 3-121, gnl|rheMac2|chr5 (107596350-107596450) | |
| 3-121, gnl|rheMac2|chr6 (150931459-150931535) | |
| 3-121, gnl|rn3|chr17 (5536438-5536536) | |
| 3-121, gnl|rn3|chr17 (5536438-5536514) | |
| 3-121, gnl|rn3|chr3 (55714930-55715011) | |
| 3-121, gnl|tetNig1|chr2 (11251800-11251723) | |
| 3-121, gnl|tetNig1|chr2 (11251796-11251723) | |
| 3-121, gnl|tetNig1|chr2 (11251796-11251723) | |
| 3-121, gnl|xenTro1|scaffold_65 (707869-707788) | |
| 3-121, gnl|xenTro1|scaffold_65 (710413-710364) | |
| 410-532, gnl|bosTau2|chr2 (14412781-14412659) | |
| 410-532, gnl|canFam2|chr36 (21465278-21465407) | |
| 410-532, gnl|canFam2|chr36 (21465402-21465280) | |
| 410-532, gnl|canFam2|chr36 (21465284-21465397) | |
| 410-532, gnl|canFam2|chr36 (21465284-21465397) | |
| 410-532, gnl|danRer3|chr21 (32995397-32995275) | |
| 410-532, gnl|danRer3|chr21 (32995275-32995395) | |
| 410-532, gnl|danRer3|chr21 (32995391-32995278) | |
| 410-532, gnl|dasNov1|scaffold_168387 (2638-2509) | |
| 410-532, gnl|dasNov1|scaffold_168387 (2515-2636) | |
| 410-532, gnl|dasNov1|scaffold_168387 (2632-2519) | |
| 410-532, gnl|dasNov1|scaffold_168387 (2632-2519) | |
| 410-532, gnl|echTel1|scaffold_304591 (1563-1685) | |
| 410-532, gnl|echTel1|scaffold_304591 (1681-1568) | |
| 410-532, gnl|echTel1|scaffold_304591 (1681-1568) | |
| 410-532, gnl|echTel1|scaffold_8973 (588-718) | |
| 410-532, gnl|galGal2|chrUn (153032225-153032096) | |
| 410-532, gnl|hg17|chr11 (34409650-34409772) | |
| 410-532, gnl|hg17|chr2 (175069156-175069285) | |
| 410-532, gnl|Hg17|chr2 (175069279-175069157) | |
| 410-532, gnl|hg17|chr4 (115993201-115993314) | |
| 410-532, gnl|hg17|chr5 (153919714-153919827) | |
| 410-532, gnl|loxAfr1|scaffold_37461 (1138-1257) | |
| 410-532, gnl|loxAfr1|scaffold_37461 (1262-1140) | |
| 410-532, gnl|loxAfr1|scaffold_37461 (1144-1257) | |
| 410-532, gnl|loxAfr1|scaffold_37461 (1144-1257) | |
| 410-532, gnl|mm7|chr2 (73147454-73147583) | |
| 410-532, gnl|mm7|chr2 (97800034-97799912) | |
| 410-532, gnl|mm7|chr2 (97799916-97800029) | |
| 410-532, gnl|mm7|chr2 (97799916-97800029) | |
| 410-532, gnl|Mm7|chr2 (73147577-73147455) | |
| 410-532, gnl|monDom2|scaffold_2 (73945288-73945417) | |
| 410-532, gnl|monDom2|scaffold_2 (73945412-73945290) | |
| 410-532, gnl|monDom2|scaffold_46 (1870693-1870588) | |
| 410-532, gnl|monDom2|scaffold_46 (1870693-1870588) | |
| 410-532, gnl|oryCun1|scaffold_177151 (6178-6307) | |
| 410-532, gnl|oryCun1|scaffold_177151 (6302-6180) | |
| 410-532, gnl|oryCun1|scaffold_93023 (8859-8948) | |
| 410-532, gnl|oryCun1|scaffold_93023 (8859-8948) | |
| 410-532, gnl|panTro1|chr13 (64706448-64706577) | |
| 410-532, gnl|panTro1|chr3 (132672453-132672566) | |
| 410-532, gnl|panTro1|chr4 (160843151-160843264) | |
| 410-532, gnl|panTro1|chr9 (34796043-34796165) | |
| 410-532, gnl|rheMac2|chr12 (38002012-38002141) | |
| 410-532, gnl|rheMac2|chr5 (107595940-107596053) | |
| 410-532, gnl|rheMac2|chr6 (150931173-150931051) | |
| 410-532, gnl|rheMac2|chr6 (150931055-150931168) | |
| 410-532, gnl|rn3|chr17 (5536152-5536030) | |
| 410-532, gnl|rn3|chr17 (5536034-5536147) | |
| 410-532, gnl|rn3|chr17 (5536034-5536147) | |
| 410-532, gnl|rn3|chr3 (55705361-55705493) | |
| 410-532, gnl|tetNig1|chr2 (11254285-11254159) | |
| 410-532, gnl|tetNig1|chr2 (11254164-11254285) | |
| 410-532, gnl|tetNig1|chr2 (11254273-11254169) | |
| 410-532, gnl|tetNig1|chr2 (11254282-11254169) | |
| 410-532, gnl|xenTro1|scaffold_65 (718228-718099) | |
| 410-532, gnl|xenTro1|scaffold_65 (718105-718226) | |
| 410-532, gnl|xenTro1|scaffold_65 (718222-718109) | |
| 410-532, gnl|xenTro1|scaffold_65 (718220-718109) |
| Expressed library(ies): 13 entry(ies) | More info |
| Expressed library(ies): 13 entry(ies) | Help | Less info |
| jej (0.395687) | |
| nep (0.36785) | |
| pgl (0.35545) | |
| aor (0.195274) | |
| sto (0.179824) | |
| sin (0.174948) | |
| eye (0.170503) | |
| ski (0.146735) | |
| lin (0.145603) | |
| nca (0.136874) | |
| pla (0.133672) | |
| bla (0.124347) | |
| ldo (0.0970026) |
| Expressed library(ies): 13 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| jej (0.395687) | |
| nep (0.36785) | |
| pgl (0.35545) | |
| aor (0.195274) | |
| sto (0.179824) | |
| sin (0.174948) | |
| eye (0.170503) | |
| ski (0.146735) | |
| lin (0.145603) | |
| nca (0.136874) | |
| pla (0.133672) | |
| bla (0.124347) | |
| ldo (0.0970026) |