Ss1.1-Pig3-SRG8026G10.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AACTGGCTCAACATGGTTCGGGCCGGGCTGCTCGCTCTGGAGTTCTACACCCCTGAGGCC ACCAGCTGGAGACAGGCCCACATGCAGGCCCGGTTTGTGATCCTGAGGGTCCTGCTGGAG GCTGGCGAGGGACTCGTGTCCGTCACCCCGACCACAGGCTCCGATGGGCGCCCGGATGCG CGGGTCCGCCTTGACCGCAGCAAGATCCGGTCTGTGGGCAAGCCCGCCCTGGAGAGGTTC CTGCGGAGGCTCCAGGTGCTGAAGTCCACCGGGGATGTCGCCGGAGGCCGGGCCCTCTAC GAGGGGTATGCAGCGGTCACTGATGCGCCCCCCGAGTGCTTCCTCTCGCTCAGGGACACG GTGCTGCTCCGCAAGGAATCTCGGAAGCTCATCGTTCAGCCCAACACTCGCCTGGAAGGC TCAGAAGTACAGCTTCTGGAGTACGAAGCCTCAGCTGCTGGCCTCATCCAGTCCTTTTCT GAGCGCTTCCCAGAGGATGGGCCCGAGTTGGAGGAGATCCTCACCCAGCTGGCCTCAGCC GATGCCCGCTTCTGGAAGCGCCCCTGTGAAGCCCCTTCTGGCCAGGCTTGAGCCAGACTT GTGTGGCCCCTCCCCCCACTCCATCAAACCAGCGTTGCAAGTGGCCCTCTTTGTGTGTGT GTGTGTGTGTGTGTGTGTGTGTTTTAGGGGCTGGGGAGGGGCAGGAGCCTGGACCTTGGT GCTACCTCAGCTGAGGGTGGTGACACTAAGCCCTTCCATTTGTCAGCACTTTCCAGCTTA CCAAGTGCTTCCCCTCTGTTATCCCATTTGATCTGCGCTGCCCTCTGTGGGGTGGGCAAG GCAAGGCCCCTTATCCTGCTTCCCACCTGAGGAAATGCAAGTGACCTGTCTACATCCTAC AGGACTCAAAATCTCTCCCAATGCAGTGCTCTTCGTGTGTTACTTTTATAACCAGAAAAG TAAATATTAGAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AACTGGCTCAACATGGTTCGGGCCGGGCTGCTCGCTCTGGAGTTCTACACCCCTGAGGCC ACCAGCTGGAGACAGGCCCACATGCAGGCCCGGTTTGTGATCCTGAGGGTCCTGCTGGAG GCTGGCGAGGGACTCGTGTCCGTCACCCCGACCACAGGCTCCGATGGGCGCCCGGATGCG CGGGTCCGCCTTGACCGCAGCAAGATCCGGTCTGTGGGCAAGCCCGCCCTGGAGAGGTTC CTGCGGAGGCTCCAGGTGCTGAAGTCCACCGGGGATGTCGCCGGAGGCCGGGCCCTCTAC GAGGGGTATGCAGCGGTCACTGATGCGCCCCCCGAGTGCTTCCTCTCGCTCAGGGACACG GTGCTGCTCCGCAAGGAATCTCGGAAGCTCATCGTTCAGCCCAACACTCGCCTGGAAGGC TCAGAAGTACAGCTTCTGGAGTACGAAGCCTCAGCTGCTGGCCTCATCCAGTCCTTTTCT GAGCGCTTCCCAGAGGATGGGCCCGAGTTGGAGGAGATCCTCACCCAGCTGGCCTCAGCC GATGCCCGCTTCTGGAAGCGCCCCTGTGAAGCCCCTTCTGGCCAGGCTTGAGCCAGACTT GTGTGGCCCCTCCCCCCACTCCATCAAACCAGCGTTGCAAGTGGCCCTCTTTGTGTGTGT GTGTGTGTGTGTGTGTGTGTGTTTTAGGGGCTGGGGAGGGGCAGGAGCCTGGACCTTGGT GCTACCTCAGCTGAGGGTGGTGACACTAAGCCCTTCCATTTGTCAGCACTTTCCAGCTTA CCAAGTGCTTCCCCTCTGTTATCCCATTTGATCTGCGCTGCCCTCTGTGGGGTGGGCAAG GCAAGGCCCCTTATCCTGCTTCCCACCTGAGGAAATGCAAGTGACCTGTCTACATCCTAC AGGACTCAAAATCTCTCCCAATGCAGTGCTCTTCGTGTGTTACTTTTATAACCAGAAAAG TAAATATTAGAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 417-535, + strand, RNAz p=0.670557 | |
| 777-972, + strand, RNAz p=0.605694 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 417-535, + strand, RNAz p=0.670557 | |
| 777-972, + strand, RNAz p=0.605694 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 5' of AK027645, + |
| Aligned organism(s): 46 entry(ies) | More info |
| Aligned organism(s): 46 entry(ies) | Help | Less info |
| 73-257, gnl|bosTau2|chr29 (37027156-37026972) | |
| 73-257, gnl|canFam2|chr18 (53869516-53869315) | |
| 73-257, gnl|canFam2|chr18 (53869334-53869510) | |
| 73-257, gnl|danRer3|chr21 (22110712-22110515) | |
| 73-257, gnl|danRer3|chr21 (22110541-22110707) | |
| 73-257, gnl|dasNov1|scaffold_140374 (702-501) | |
| 73-257, gnl|dasNov1|scaffold_140374 (520-696) | |
| 73-257, gnl|echTel1|scaffold_280076 (629-429) | |
| 73-257, gnl|echTel1|scaffold_280076 (447-618) | |
| 73-257, gnl|fr1|chrUn (241236760-241236564) | |
| 73-257, gnl|fr1|chrUn (241236592-241236754) | |
| 73-257, gnl|hg17|chr11 (66021336-66021537) | |
| 73-257, gnl|Hg17|chr11 (66021342-66021526) | |
| 73-257, gnl|hg17|chr9 (73319178-73319354) | |
| 73-257, gnl|loxAfr1|scaffold_13575 (2866-2666) | |
| 73-257, gnl|loxAfr1|scaffold_13575 (2684-2855) | |
| 73-257, gnl|mm7|chr19 (4808768-4808568) | |
| 73-257, gnl|mm7|chr19 (4808587-4808763) | |
| 73-257, gnl|Mm7|chr19 (4808761-4808577) | |
| 73-257, gnl|monDom2|scaffold_107 (2497773-2497567) | |
| 73-257, gnl|monDom2|scaffold_107 (2497593-2497767) | |
| 73-257, gnl|panTro1|chr11 (57146752-57146928) | |
| 73-257, gnl|panTro1|chr9 (67268382-67268583) | |
| 73-257, gnl|rheMac2|chr14 (7949970-7949769) | |
| 73-257, gnl|rheMac2|chr15 (82252180-82252356) | |
| 73-257, gnl|rn3|chr1 (207683017-207682811) | |
| 73-257, gnl|rn3|chr3 (138193735-138193559) | |
| 73-257, gnl|tetNig1|chr7 (9515983-9515799) | |
| 73-257, gnl|tetNig1|chr7 (9515835-9515979) | |
| 73-257, gnl|xenTro1|scaffold_521 (482273-482458) | |
| 417-657, gnl|bosTau2|chr29 (37019455-37019217) | |
| 417-657, gnl|Hg17|chr11 (66033124-66033362) | |
| 417-657, gnl|Mm7|chr19 (4802605-4802364) | |
| 682-972, gnl|bosTau2|chr29 (37019221-37018926) | |
| 682-972, gnl|canFam2|chr18 (53861252-53861493) | |
| 682-972, gnl|dasNov1|scaffold_63197 (1040-780) | |
| 682-972, gnl|echTel1|scaffold_287037 (5116-5331) | |
| 682-972, gnl|Hg17|chr11 (66033358-66033694) | |
| 682-972, gnl|hg17|chr9 (73318412-73318700) | |
| 682-972, gnl|loxAfr1|scaffold_55024 (4123-4348) | |
| 682-972, gnl|mm7|chr19 (4802038-4802297) | |
| 682-972, gnl|Mm7|chr19 (4802368-4802047) | |
| 682-972, gnl|oryCun1|scaffold_126368 (2525-2730) | |
| 682-972, gnl|panTro1|chr11 (57145988-57146275) | |
| 682-972, gnl|rheMac2|chr15 (82251407-82251696) | |
| 682-972, gnl|rn3|chr3 (138194480-138194204) |
| Aligned organism(s): 46 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 73-257, gnl|bosTau2|chr29 (37027156-37026972) | |
| 73-257, gnl|canFam2|chr18 (53869516-53869315) | |
| 73-257, gnl|canFam2|chr18 (53869334-53869510) | |
| 73-257, gnl|danRer3|chr21 (22110712-22110515) | |
| 73-257, gnl|danRer3|chr21 (22110541-22110707) | |
| 73-257, gnl|dasNov1|scaffold_140374 (702-501) | |
| 73-257, gnl|dasNov1|scaffold_140374 (520-696) | |
| 73-257, gnl|echTel1|scaffold_280076 (629-429) | |
| 73-257, gnl|echTel1|scaffold_280076 (447-618) | |
| 73-257, gnl|fr1|chrUn (241236760-241236564) | |
| 73-257, gnl|fr1|chrUn (241236592-241236754) | |
| 73-257, gnl|hg17|chr11 (66021336-66021537) | |
| 73-257, gnl|Hg17|chr11 (66021342-66021526) | |
| 73-257, gnl|hg17|chr9 (73319178-73319354) | |
| 73-257, gnl|loxAfr1|scaffold_13575 (2866-2666) | |
| 73-257, gnl|loxAfr1|scaffold_13575 (2684-2855) | |
| 73-257, gnl|mm7|chr19 (4808768-4808568) | |
| 73-257, gnl|mm7|chr19 (4808587-4808763) | |
| 73-257, gnl|Mm7|chr19 (4808761-4808577) | |
| 73-257, gnl|monDom2|scaffold_107 (2497773-2497567) | |
| 73-257, gnl|monDom2|scaffold_107 (2497593-2497767) | |
| 73-257, gnl|panTro1|chr11 (57146752-57146928) | |
| 73-257, gnl|panTro1|chr9 (67268382-67268583) | |
| 73-257, gnl|rheMac2|chr14 (7949970-7949769) | |
| 73-257, gnl|rheMac2|chr15 (82252180-82252356) | |
| 73-257, gnl|rn3|chr1 (207683017-207682811) | |
| 73-257, gnl|rn3|chr3 (138193735-138193559) | |
| 73-257, gnl|tetNig1|chr7 (9515983-9515799) | |
| 73-257, gnl|tetNig1|chr7 (9515835-9515979) | |
| 73-257, gnl|xenTro1|scaffold_521 (482273-482458) | |
| 417-657, gnl|bosTau2|chr29 (37019455-37019217) | |
| 417-657, gnl|Hg17|chr11 (66033124-66033362) | |
| 417-657, gnl|Mm7|chr19 (4802605-4802364) | |
| 682-972, gnl|bosTau2|chr29 (37019221-37018926) | |
| 682-972, gnl|canFam2|chr18 (53861252-53861493) | |
| 682-972, gnl|dasNov1|scaffold_63197 (1040-780) | |
| 682-972, gnl|echTel1|scaffold_287037 (5116-5331) | |
| 682-972, gnl|Hg17|chr11 (66033358-66033694) | |
| 682-972, gnl|hg17|chr9 (73318412-73318700) | |
| 682-972, gnl|loxAfr1|scaffold_55024 (4123-4348) | |
| 682-972, gnl|mm7|chr19 (4802038-4802297) | |
| 682-972, gnl|Mm7|chr19 (4802368-4802047) | |
| 682-972, gnl|oryCun1|scaffold_126368 (2525-2730) | |
| 682-972, gnl|panTro1|chr11 (57145988-57146275) | |
| 682-972, gnl|rheMac2|chr15 (82251407-82251696) | |
| 682-972, gnl|rn3|chr3 (138194480-138194204) |
| Expressed library(ies): 7 entry(ies) | More info |
| Expressed library(ies): 7 entry(ies) | Help | Less info |
| cly (0.241284) | |
| nep (0.183925) | |
| sto (0.179824) | |
| fhi (0.169578) | |
| ecc (0.115035) | |
| cty (0.10408) | |
| jej (0.0989218) |
| Expressed library(ies): 7 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cly (0.241284) | |
| nep (0.183925) | |
| sto (0.179824) | |
| fhi (0.169578) | |
| ecc (0.115035) | |
| cty (0.10408) | |
| jej (0.0989218) |