Non-Coding RNA Search

Ss1.1-Pig3-SRG8026H07.3

Sequence:


               
               TGGGTCACTCGACCTCCTTAAGGACCCGAGGGAGATGCTTGTGGAGCCTGATGGAATTCG
AATGGGGTCAAGGGAAAGAATGCATAGCGCTCCTCCCAAACTATGGTACTACAATTCCCA
TGAGAAATTCAGAGGGAGCCTGCTTGTTCTTGCTGGTTTGGGTCCCAATGGTTTGTGGGA
ATTGTAGTTCAAAGACTATCGGTCCAGGACCGCCCACTCTACTGAGCATCTTCAATGTGT
GTCTGTATGAGTGTGTGTGTATGTGTTTTCCGTATGCCACCAGACCTAAATCTGGGGAGC
CTGCAGGAATGGGGTGTCAGGCTCAATACCTTGTGGACATCCTCTGCTCCACCCTGGCAG
AGACTGTCCCAAATTACAGGCCTCATGCTCTCCTGAGAGGATATAGGAGTGAGTAAATCA
GCCCTTGAAGCTCATAAAAGAAAGAAGAGGCCACACAGCTGGGAGAGGTTCCCCATAATT
GTAAGGCTTTGAAGAGGGTGTGCGCTGAATGGATTTTACAGTGAGCAACATCTTCTGTGG
CTGCATCACTTTTGGGGCCTAGCTGGGAGAAGACATTTCAGATCTGGACCATCGAGTGCC
CTGGTTTCTTAGTTTGTTGCCTTCCTGGCTTTAATTTCTTCCTGAATTCTTTTCCCCTTT
GCCTCACTGCACACTGCACTTCAATATCAGTGTTCCTCACTACTTAGTCCTAATCTCTCC
TCTCCTTTCATTTGTGTCTCCATTCATACCCTCTTACACCTCTCAGTTTTTCTAAACATA
GTCTTAATTGTGGTCTTTGCTTTAACACCTCTTCAGGCCTCCTGCTGTGATTAGATTACA
GCCAAAGTCTTGGCCATAACATCCAAGTCTCTTTGTTGTCTGGCCTCCATCTCTCTTACA
TTTCCACACCCCACCTCCCATCCCCAAAGTGCCCAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGGGTCACTCGACCTCCTTAAGGACCCGAGGGAGATGCTTGTGGAGCCTGATGGAATTCG
AATGGGGTCAAGGGAAAGAATGCATAGCGCTCCTCCCAAACTATGGTACTACAATTCCCA
TGAGAAATTCAGAGGGAGCCTGCTTGTTCTTGCTGGTTTGGGTCCCAATGGTTTGTGGGA
ATTGTAGTTCAAAGACTATCGGTCCAGGACCGCCCACTCTACTGAGCATCTTCAATGTGT
GTCTGTATGAGTGTGTGTGTATGTGTTTTCCGTATGCCACCAGACCTAAATCTGGGGAGC
CTGCAGGAATGGGGTGTCAGGCTCAATACCTTGTGGACATCCTCTGCTCCACCCTGGCAG
AGACTGTCCCAAATTACAGGCCTCATGCTCTCCTGAGAGGATATAGGAGTGAGTAAATCA
GCCCTTGAAGCTCATAAAAGAAAGAAGAGGCCACACAGCTGGGAGAGGTTCCCCATAATT
GTAAGGCTTTGAAGAGGGTGTGCGCTGAATGGATTTTACAGTGAGCAACATCTTCTGTGG
CTGCATCACTTTTGGGGCCTAGCTGGGAGAAGACATTTCAGATCTGGACCATCGAGTGCC
CTGGTTTCTTAGTTTGTTGCCTTCCTGGCTTTAATTTCTTCCTGAATTCTTTTCCCCTTT
GCCTCACTGCACACTGCACTTCAATATCAGTGTTCCTCACTACTTAGTCCTAATCTCTCC
TCTCCTTTCATTTGTGTCTCCATTCATACCCTCTTACACCTCTCAGTTTTTCTAAACATA
GTCTTAATTGTGGTCTTTGCTTTAACACCTCTTCAGGCCTCCTGCTGTGATTAGATTACA
GCCAAAGTCTTGGCCATAACATCCAAGTCTCTTTGTTGTCTGGCCTCCATCTCTCTTACA
TTTCCACACCCCACCTCCCATCCCCAAAGTGCCCAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               277-476, - strand, RNAz p=0.843673

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               277-476, - strand, RNAz p=0.843673

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               1-935, gnl|bosTau2|chr25 (33196160-33197074)
               

               
               1-935, gnl|Hg17|chr7 (99362218-99363029)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-935, gnl|bosTau2|chr25 (33196160-33197074)
               

               
               1-935, gnl|Hg17|chr7 (99362218-99363029)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               csk (0.140746)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               csk (0.140746)

	1-935, gnl\|bosTau2\|chr25 (33196160-33197074)
	1-935, gnl\|Hg17\|chr7 (99362218-99363029)