Ss1.1-Pig3-SRG8026J01.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TCACGGCCCTGATTCTTTGTCTTGTGCTGCCAGAGAAATGGAGTTATTTTTTCCTTCGAG TGGAGTCTGTGGGCCAGCAAACACTGCTAAATTTACCAATTGCACTACTTGTTGCATTGT TAAGCCCCATGCCATCAGTGAAGGACTGCTGGGAAAGATCCTGATGGCTATCCGAGATGC AGGTTTTGAAATCTCAGCTATGCAGATGTTCAACATGGATCGAGTTAATGTTGAAGAGTT TTATGAAGTTTATAAAGGAGTAGTGTCTGAATATAATGAAATGGTGACAGAAATGTATTC TGGCCCTTGTGTAGCCATGGAGATTCAACAGACTAATCCTACAATGACATTTCGAGAATT CTGTGGACCTGCTGATCCTGAAATTGCCCGGCATTTACGCCCTGGAACCCTCCGAGCAAT CTTTGGTAAAACTAAGATCCAGAATGCTGTACACTGTACTGATCTGCCAGAGGACGGCCT ATTAGAGGTTCAGTATTTCTTCAAGATCTTGGATAACTAGCAGTAGAGAAAGAAGTCACA GGTTGGGACATTTAGACAAGAGTGAATCATTCACATGAGAAATGTGTTCATTCTTTTATT GTCCATTGTTTTAACCTGACTGAATACAAGATCAACAAGAGCACTGTACTCCTGGCAATT ATGACATATGTTAGAACATGGATTTTGCACTGTAGACAACATTTAACACCAGTCTATGGG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TCACGGCCCTGATTCTTTGTCTTGTGCTGCCAGAGAAATGGAGTTATTTTTTCCTTCGAG TGGAGTCTGTGGGCCAGCAAACACTGCTAAATTTACCAATTGCACTACTTGTTGCATTGT TAAGCCCCATGCCATCAGTGAAGGACTGCTGGGAAAGATCCTGATGGCTATCCGAGATGC AGGTTTTGAAATCTCAGCTATGCAGATGTTCAACATGGATCGAGTTAATGTTGAAGAGTT TTATGAAGTTTATAAAGGAGTAGTGTCTGAATATAATGAAATGGTGACAGAAATGTATTC TGGCCCTTGTGTAGCCATGGAGATTCAACAGACTAATCCTACAATGACATTTCGAGAATT CTGTGGACCTGCTGATCCTGAAATTGCCCGGCATTTACGCCCTGGAACCCTCCGAGCAAT CTTTGGTAAAACTAAGATCCAGAATGCTGTACACTGTACTGATCTGCCAGAGGACGGCCT ATTAGAGGTTCAGTATTTCTTCAAGATCTTGGATAACTAGCAGTAGAGAAAGAAGTCACA GGTTGGGACATTTAGACAAGAGTGAATCATTCACATGAGAAATGTGTTCATTCTTTTATT GTCCATTGTTTTAACCTGACTGAATACAAGATCAACAAGAGCACTGTACTCCTGGCAATT ATGACATATGTTAGAACATGGATTTTGCACTGTAGACAACATTTAACACCAGTCTATGGG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 525-639, + strand, RNAz p=0.904021 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 525-639, + strand, RNAz p=0.904021 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 5' of NM_013330, + |
| Aligned organism(s): 33 entry(ies) | More info |
| Aligned organism(s): 33 entry(ies) | Help | Less info |
| 35-144, gnl|bosTau2|chr16 (24708548-24708439) | |
| 35-144, gnl|canFam2|chr7 (32256133-32255987) | |
| 35-144, gnl|danRer3|chr6 (16864009-16863874) | |
| 35-144, gnl|fr1|chrUn (267357327-267357452) | |
| 35-144, gnl|galGal2|chr1 (77803186-77803049) | |
| 35-144, gnl|hg17|chr1 (165988198-165988337) | |
| 35-144, gnl|Hg17|chr1 (165988304-165988198) | |
| 35-144, gnl|loxAfr1|scaffold_19358 (35035-34889) | |
| 35-144, gnl|mm7|chr1 (164313884-164313731) | |
| 35-144, gnl|Mm7|chr1 (164313769-164313875) | |
| 35-144, gnl|monDom2|scaffold_16 (20374100-20374246) | |
| 35-144, gnl|oryCun1|scaffold_151435 (2160-2014) | |
| 35-144, gnl|panTro1|chr1 (148253389-148253535) | |
| 35-144, gnl|rheMac2|chr1 (199002336-199002482) | |
| 35-144, gnl|rn3|chr13 (80137909-80137754) | |
| 35-144, gnl|tetNig1|chrUn_random (76672167-76672292) | |
| 278-383, gnl|bosTau2|chr16 (23061430-23061325) | |
| 278-383, gnl|canFam2|chr7 (32307016-32306907) | |
| 278-383, gnl|dasNov1|scaffold_41803 (39802-39693) | |
| 278-383, gnl|echTel1|scaffold_299726 (6246-6355) | |
| 278-383, gnl|hg17|chr1 (165931609-165931718) | |
| 278-383, gnl|Hg17|chr1 (165931715-165931610) | |
| 278-383, gnl|loxAfr1|scaffold_33263 (11310-11419) | |
| 278-383, gnl|mm7|chr1 (164351805-164351696) | |
| 278-383, gnl|Mm7|chr1 (164351697-164351802) | |
| 278-383, gnl|oryCun1|scaffold_211508 (1709-1605) | |
| 278-383, gnl|panTro1|chr1 (148199741-148199850) | |
| 278-383, gnl|rheMac2|chr1 (198966125-198966234) | |
| 278-383, gnl|rn3|chr13 (80172229-80172120) | |
| 278-383, gnl|tetNig1|chrUn_random (76669039-76669148) | |
| 486-720, gnl|bosTau2|chr16 (22918460-22918221) | |
| 486-720, gnl|Hg17|chr1 (165833715-165833478) | |
| 486-720, gnl|Mm7|chr1 (164402742-164402975) |
| Aligned organism(s): 33 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 35-144, gnl|bosTau2|chr16 (24708548-24708439) | |
| 35-144, gnl|canFam2|chr7 (32256133-32255987) | |
| 35-144, gnl|danRer3|chr6 (16864009-16863874) | |
| 35-144, gnl|fr1|chrUn (267357327-267357452) | |
| 35-144, gnl|galGal2|chr1 (77803186-77803049) | |
| 35-144, gnl|hg17|chr1 (165988198-165988337) | |
| 35-144, gnl|Hg17|chr1 (165988304-165988198) | |
| 35-144, gnl|loxAfr1|scaffold_19358 (35035-34889) | |
| 35-144, gnl|mm7|chr1 (164313884-164313731) | |
| 35-144, gnl|Mm7|chr1 (164313769-164313875) | |
| 35-144, gnl|monDom2|scaffold_16 (20374100-20374246) | |
| 35-144, gnl|oryCun1|scaffold_151435 (2160-2014) | |
| 35-144, gnl|panTro1|chr1 (148253389-148253535) | |
| 35-144, gnl|rheMac2|chr1 (199002336-199002482) | |
| 35-144, gnl|rn3|chr13 (80137909-80137754) | |
| 35-144, gnl|tetNig1|chrUn_random (76672167-76672292) | |
| 278-383, gnl|bosTau2|chr16 (23061430-23061325) | |
| 278-383, gnl|canFam2|chr7 (32307016-32306907) | |
| 278-383, gnl|dasNov1|scaffold_41803 (39802-39693) | |
| 278-383, gnl|echTel1|scaffold_299726 (6246-6355) | |
| 278-383, gnl|hg17|chr1 (165931609-165931718) | |
| 278-383, gnl|Hg17|chr1 (165931715-165931610) | |
| 278-383, gnl|loxAfr1|scaffold_33263 (11310-11419) | |
| 278-383, gnl|mm7|chr1 (164351805-164351696) | |
| 278-383, gnl|Mm7|chr1 (164351697-164351802) | |
| 278-383, gnl|oryCun1|scaffold_211508 (1709-1605) | |
| 278-383, gnl|panTro1|chr1 (148199741-148199850) | |
| 278-383, gnl|rheMac2|chr1 (198966125-198966234) | |
| 278-383, gnl|rn3|chr13 (80172229-80172120) | |
| 278-383, gnl|tetNig1|chrUn_random (76669039-76669148) | |
| 486-720, gnl|bosTau2|chr16 (22918460-22918221) | |
| 486-720, gnl|Hg17|chr1 (165833715-165833478) | |
| 486-720, gnl|Mm7|chr1 (164402742-164402975) |
| Expressed library(ies): 6 entry(ies) | More info |
| Expressed library(ies): 6 entry(ies) | Help | Less info |
| sug (0.254582) | |
| pan (0.23596) | |
| cmu (0.186393) | |
| mga (0.160205) | |
| ste (0.135208) | |
| spc (0.113366) |
| Expressed library(ies): 6 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| sug (0.254582) | |
| pan (0.23596) | |
| cmu (0.186393) | |
| mga (0.160205) | |
| ste (0.135208) | |
| spc (0.113366) |