Non-Coding RNA Search

Ss1.1-Pig3-SRG8026K18.3

Sequence:


               
               TCGGACGGCCAAGGCCAGACCCAGGTGTCCTGCAGGGCTCTTTGAAGCGGTTGCTGACAG
ATGCCTTGTCCCGGCCCTTGACACTGGGCTTTGGGCTTCGGGCCTTGGGGATAAACGTTG
GGAAAGTCGGGGGAAGCACAGTGCATGTGATTGGCGCTTCCCATGCAGAGACATTCCTCA
CTCGCCCCAGGGACTATGATGAGCTTGGCTACATGTTTCCTGGGCACCTTGGCTTCCACA
TAATCATGGTGGGTGTGGATGTAGCTGCTGACTTTTCACAGAGCCCCTCCGCTTCACTCC
CAGAACCTGGCACAATTCAGCTTAGTAGCCACAGGGGCCTCTATCATGACTTCTGGGAGG
AGCAGGTAGAGACTGGGAAGATACCTCATCCAGATTTGGTGGTGGCATTCCATCCAGGTT
TCCATGCTTCTGCGGACTTGATGGAGGCTTGGCTGCCCACTCTCCTGCTACTTCGTGATT
ATGAGATCCCTACAATGATTACTGTTTACAGCCATCAGGAGTTGGCAGCCTCTTTGCAGA
TCCTGGCGGACCTGGATATACACATCACAGCCTATGGAGCGAACCCTTTCGCCTCCCTCA
AACCTGAACAGGTGTACTCCAACCCCAACAAGCAGCCAGTATATTGCAGCACTTACTATA
TTATGTTTCTCGGAAGCTCCTGCCAGCTGGATAAGAGGCAATTGGAAGAGAAAGTAGATG
ACGGGGTATAAATAGCTGTGCCAGATCCTGACTGGATGTCTAGAAAATGGAGAGGTTGTG
ATGAAATGACATGTTGATGCCAGGTTATTACCGACTTTAAAACCCGCTAAATCCTAAACC
TAATACACTTGTCTAGGTAGATTCTAAACTGAACGGGAGCTCCTCTATGATATGACTCAT
TTCTAAGAGGTTAGCCACACGTAGCTTCTAGAGACAGGATTCTTGATTTAGTGTGTGGCA
AAAGGCCCTAGTATCAGTCTTTAGAGCCTAAAGTTCCTAACAGATTCCTTTGTGAGAAAG
TTATACTTTCTGACTTGAACCACATGGCACGAAGGAGAAGAATGGCACCTTATTCTTCCA
AAGAAAAAATTTTCTTATATGGCAATTTGAGCTCAAAAATATAGAGGTATTAATGACTTG
AAGTGGTGGAAGAATGAGTAAGTCAGAAAAGTGGTTGGGATCATGAGGGAGGTTGTGAGG
ATTGCTACCTTGTTCTATCTTCTGACATTACTTGAATATACTGAAGTTTGTTATCACCTG
GTCTATACCACAATAAACTCTGTTTGGAGCTGCAAAAAAAAAAAAAAAAAAAAAAAAAAA
AACCCCAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCGGACGGCCAAGGCCAGACCCAGGTGTCCTGCAGGGCTCTTTGAAGCGGTTGCTGACAG
ATGCCTTGTCCCGGCCCTTGACACTGGGCTTTGGGCTTCGGGCCTTGGGGATAAACGTTG
GGAAAGTCGGGGGAAGCACAGTGCATGTGATTGGCGCTTCCCATGCAGAGACATTCCTCA
CTCGCCCCAGGGACTATGATGAGCTTGGCTACATGTTTCCTGGGCACCTTGGCTTCCACA
TAATCATGGTGGGTGTGGATGTAGCTGCTGACTTTTCACAGAGCCCCTCCGCTTCACTCC
CAGAACCTGGCACAATTCAGCTTAGTAGCCACAGGGGCCTCTATCATGACTTCTGGGAGG
AGCAGGTAGAGACTGGGAAGATACCTCATCCAGATTTGGTGGTGGCATTCCATCCAGGTT
TCCATGCTTCTGCGGACTTGATGGAGGCTTGGCTGCCCACTCTCCTGCTACTTCGTGATT
ATGAGATCCCTACAATGATTACTGTTTACAGCCATCAGGAGTTGGCAGCCTCTTTGCAGA
TCCTGGCGGACCTGGATATACACATCACAGCCTATGGAGCGAACCCTTTCGCCTCCCTCA
AACCTGAACAGGTGTACTCCAACCCCAACAAGCAGCCAGTATATTGCAGCACTTACTATA
TTATGTTTCTCGGAAGCTCCTGCCAGCTGGATAAGAGGCAATTGGAAGAGAAAGTAGATG
ACGGGGTATAAATAGCTGTGCCAGATCCTGACTGGATGTCTAGAAAATGGAGAGGTTGTG
ATGAAATGACATGTTGATGCCAGGTTATTACCGACTTTAAAACCCGCTAAATCCTAAACC
TAATACACTTGTCTAGGTAGATTCTAAACTGAACGGGAGCTCCTCTATGATATGACTCAT
TTCTAAGAGGTTAGCCACACGTAGCTTCTAGAGACAGGATTCTTGATTTAGTGTGTGGCA
AAAGGCCCTAGTATCAGTCTTTAGAGCCTAAAGTTCCTAACAGATTCCTTTGTGAGAAAG
TTATACTTTCTGACTTGAACCACATGGCACGAAGGAGAAGAATGGCACCTTATTCTTCCA
AAGAAAAAATTTTCTTATATGGCAATTTGAGCTCAAAAATATAGAGGTATTAATGACTTG
AAGTGGTGGAAGAATGAGTAAGTCAGAAAAGTGGTTGGGATCATGAGGGAGGTTGTGAGG
ATTGCTACCTTGTTCTATCTTCTGACATTACTTGAATATACTGAAGTTTGTTATCACCTG
GTCTATACCACAATAAACTCTGTTTGGAGCTGCAAAAAAAAAAAAAAAAAAAAAAAAAAA
AACCCCAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|57085109|ref|XP_536389.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|57085109|ref|XP_536389.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               4-123, - strand, RNAz p=0.837708
               

               
               302-419, + strand, RNAz p=0.519991

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               4-123, - strand, RNAz p=0.837708
               

               
               302-419, + strand, RNAz p=0.519991

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of BX537678, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of BX537678, +

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               4-419, gnl|bosTau2|chr28 (22639538-22639123)
               

               
               4-419, gnl|Hg17|chr10 (74855988-74855573)
               

               
               4-419, gnl|Mm7|chr14 (18141605-18141190)
               


               
               510-1241, gnl|bosTau2|chr28 (22638463-22637731)
               

               
               510-1241, gnl|Hg17|chr10 (74854538-74853505)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               4-419, gnl|bosTau2|chr28 (22639538-22639123)
               

               
               4-419, gnl|Hg17|chr10 (74855988-74855573)
               

               
               4-419, gnl|Mm7|chr14 (18141605-18141190)
               


               
               510-1241, gnl|bosTau2|chr28 (22638463-22637731)
               

               
               510-1241, gnl|Hg17|chr10 (74854538-74853505)

Expressed library(ies): 12 entry(ies)

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Expressed library(ies): 12 entry(ies)

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               sme (0.610874)
               

               
               ldo (0.38801)
               

               
               tbr (0.308356)
               

               
               gul (0.177588)
               

               
               isp (0.150376)
               

               
               bfe (0.149858)
               

               
               ski (0.146735)
               

               
               liv (0.146284)
               

               
               cst (0.140036)
               

               
               ssp (0.13552)
               

               
               med (0.116252)
               

               
               nbm (0.0993246)

Expressed library(ies): 12 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sme (0.610874)
               

               
               ldo (0.38801)
               

               
               tbr (0.308356)
               

               
               gul (0.177588)
               

               
               isp (0.150376)
               

               
               bfe (0.149858)
               

               
               ski (0.146735)
               

               
               liv (0.146284)
               

               
               cst (0.140036)
               

               
               ssp (0.13552)
               

               
               med (0.116252)
               

               
               nbm (0.0993246)

	4-123, - strand, RNAz p=0.837708
	302-419, + strand, RNAz p=0.519991

	4-419, gnl\|bosTau2\|chr28 (22639538-22639123)
	4-419, gnl\|Hg17\|chr10 (74855988-74855573)
	4-419, gnl\|Mm7\|chr14 (18141605-18141190)

	510-1241, gnl\|bosTau2\|chr28 (22638463-22637731)
	510-1241, gnl\|Hg17\|chr10 (74854538-74853505)

	sme (0.610874)
	ldo (0.38801)
	tbr (0.308356)
	gul (0.177588)
	isp (0.150376)
	bfe (0.149858)
	ski (0.146735)
	liv (0.146284)
	cst (0.140036)
	ssp (0.13552)
	med (0.116252)
	nbm (0.0993246)