Ss1.1-Pig3-SRG8026K19.3
|
CGGCCCTGAGGAAGATGTCGCTCCTGTGGTCGCTGCGCCTGTCCCTGGTTGCGCGGGCTG
CGAGCTGCCCAGTGAGGGCTCTTGGCCCCAGCCCCGTTCTGCCTTCCTCGCAGGCGGGGC
CCCTTCTGCTTCAGTCGCCGCAGCCGGGGCATACGTTTCACGCAGGGCCATGCCTGTCCT
CCGCCTCCAGCAAGGAGCTCCTCATGAAGCTGCGGCGGAAGACGGGCTACTCCTTTGTAA
ACTGCAAGAAAGCTCTGGAGACTTGCGGTGGGGATCTCAAACAGGCAGAGAGCTGGCTCC
ACAAGCAGGCCCAGAAGGAGGGCTGGAGTAAAGCTGCCAGGCTCCATGGGAGGAAGACTA
AAGAAGGTCTGATTGGGCTGCTGCAGGAAGGAAACACAAGTGTGTTGGTAGAGGTAAACT
GTGAGACAGATTTTGTTTCCAGAAACTTAAAATTTCAACAATTGGTCCAGCAAGTAGCCC
TGGGAACCCTGTTGCACTGTCAGAGCCTAAAGGATCCACTCTCCACGTATAGTAAAGGCT
TCTTGAATTCTTCCGAGCTTTCTGAACTTCCAGCGGGCCCTGAGAGAGAAGGGTCTCTCA
AAGATTGGCTGGCCTTAGCAATTGGGAAACTGGGAGAAAACATGACTCTTAAACGAGCTG
CATGGGTGAAGGTGCCAGCTGGGTTCTATGTGGGCTCTTATGTCCATGGGACAATGCAGA
GTCCCTCACTCCACAACCTGGTGCTGGGGAAGTATGGGGCCCTGGTCATCTGCGAGACGT
CTGAGCGGAAAGCAAACCTTGAAGACCTTGGCCGCCGCCTTGGGCAGCACGTGGTGGGCA
TGGCTCCTCTCTCTGTTGGCTCCCTGGACGATGAGCCTGGGGGAGAGGCAGAAACCAGGA
TGCTGTCCCAGCCATACTTGCTGGATCCCTCCATCACACTTGGACAGTATGTGCAGCCCC
AAGGGGTATCTGTAGTAGACTTTGTGCGGTTCGAATGTGGAGAAGGCGAAGAACTAGCAG
AGGCCGAATAGCTTCCAGAGACTTTTGGCCCATGGGAAAACATTTATTCTTAACCGTGGA
CATTATTACAAAAAGAAGTTATTTCCTAAGCATCTTCAAACCCAGAATTTGTTTTTCATT
TGAGTTCATAATGAAATTATATACTTCATGGGTAGAGTTATTAAATAAAATTAATAGAGT
AGAAAAAAAAAA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
CGGCCCTGAGGAAGATGTCGCTCCTGTGGTCGCTGCGCCTGTCCCTGGTTGCGCGGGCTG
CGAGCTGCCCAGTGAGGGCTCTTGGCCCCAGCCCCGTTCTGCCTTCCTCGCAGGCGGGGC
CCCTTCTGCTTCAGTCGCCGCAGCCGGGGCATACGTTTCACGCAGGGCCATGCCTGTCCT
CCGCCTCCAGCAAGGAGCTCCTCATGAAGCTGCGGCGGAAGACGGGCTACTCCTTTGTAA
ACTGCAAGAAAGCTCTGGAGACTTGCGGTGGGGATCTCAAACAGGCAGAGAGCTGGCTCC
ACAAGCAGGCCCAGAAGGAGGGCTGGAGTAAAGCTGCCAGGCTCCATGGGAGGAAGACTA
AAGAAGGTCTGATTGGGCTGCTGCAGGAAGGAAACACAAGTGTGTTGGTAGAGGTAAACT
GTGAGACAGATTTTGTTTCCAGAAACTTAAAATTTCAACAATTGGTCCAGCAAGTAGCCC
TGGGAACCCTGTTGCACTGTCAGAGCCTAAAGGATCCACTCTCCACGTATAGTAAAGGCT
TCTTGAATTCTTCCGAGCTTTCTGAACTTCCAGCGGGCCCTGAGAGAGAAGGGTCTCTCA
AAGATTGGCTGGCCTTAGCAATTGGGAAACTGGGAGAAAACATGACTCTTAAACGAGCTG
CATGGGTGAAGGTGCCAGCTGGGTTCTATGTGGGCTCTTATGTCCATGGGACAATGCAGA
GTCCCTCACTCCACAACCTGGTGCTGGGGAAGTATGGGGCCCTGGTCATCTGCGAGACGT
CTGAGCGGAAAGCAAACCTTGAAGACCTTGGCCGCCGCCTTGGGCAGCACGTGGTGGGCA
TGGCTCCTCTCTCTGTTGGCTCCCTGGACGATGAGCCTGGGGGAGAGGCAGAAACCAGGA
TGCTGTCCCAGCCATACTTGCTGGATCCCTCCATCACACTTGGACAGTATGTGCAGCCCC
AAGGGGTATCTGTAGTAGACTTTGTGCGGTTCGAATGTGGAGAAGGCGAAGAACTAGCAG
AGGCCGAATAGCTTCCAGAGACTTTTGGCCCATGGGAAAACATTTATTCTTAACCGTGGA
CATTATTACAAAAAGAAGTTATTTCCTAAGCATCTTCAAACCCAGAATTTGTTTTTCATT
TGAGTTCATAATGAAATTATATACTTCATGGGTAGAGTTATTAAATAAAATTAATAGAGT
AGAAAAAAAAAA
|
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94-285, gnl|bosTau2|chr5 (34356840-34357030) |
|
94-285, gnl|Hg17|chr12 (56463140-56463334) |
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94-285, gnl|Mm7|chr10 (126528133-126527940) |
| |
|
412-537, gnl|bosTau2|chr5 (34358753-34358878) |
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412-537, gnl|canFam2|chr10 (4829025-4829120) |
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412-537, gnl|danRer3|chrNA (176360252-176360176) |
|
412-537, gnl|echTel1|scaffold_319337 (104910-105004) |
|
412-537, gnl|fr1|chrUn (310397931-310398025) |
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412-537, gnl|hg17|chr12 (56467087-56467181) |
|
412-537, gnl|Hg17|chr12 (56467088-56467213) |
|
412-537, gnl|loxAfr1|scaffold_30819 (37385-37291) |
|
412-537, gnl|mm7|chr10 (126525970-126525876) |
|
412-537, gnl|Mm7|chr10 (126525967-126525842) |
|
412-537, gnl|monDom2|scaffold_283 (179984-180078) |
|
412-537, gnl|panTro1|chr10 (57712558-57712652) |
|
412-537, gnl|rheMac2|chr11 (54876448-54876542) |
|
412-537, gnl|tetNig1|chr11 (6602608-6602702) |
| |
|
624-1210, gnl|bosTau2|chr5 (34363966-34364550) |
|
624-1210, gnl|Hg17|chr12 (56476226-56476764) |
|
624-1210, gnl|Mm7|chr10 (126520405-126519830) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
94-285, gnl|bosTau2|chr5 (34356840-34357030) |
|
94-285, gnl|Hg17|chr12 (56463140-56463334) |
|
94-285, gnl|Mm7|chr10 (126528133-126527940) |
| |
|
412-537, gnl|bosTau2|chr5 (34358753-34358878) |
|
412-537, gnl|canFam2|chr10 (4829025-4829120) |
|
412-537, gnl|danRer3|chrNA (176360252-176360176) |
|
412-537, gnl|echTel1|scaffold_319337 (104910-105004) |
|
412-537, gnl|fr1|chrUn (310397931-310398025) |
|
412-537, gnl|hg17|chr12 (56467087-56467181) |
|
412-537, gnl|Hg17|chr12 (56467088-56467213) |
|
412-537, gnl|loxAfr1|scaffold_30819 (37385-37291) |
|
412-537, gnl|mm7|chr10 (126525970-126525876) |
|
412-537, gnl|Mm7|chr10 (126525967-126525842) |
|
412-537, gnl|monDom2|scaffold_283 (179984-180078) |
|
412-537, gnl|panTro1|chr10 (57712558-57712652) |
|
412-537, gnl|rheMac2|chr11 (54876448-54876542) |
|
412-537, gnl|tetNig1|chr11 (6602608-6602702) |
| |
|
624-1210, gnl|bosTau2|chr5 (34363966-34364550) |
|
624-1210, gnl|Hg17|chr12 (56476226-56476764) |
|
624-1210, gnl|Mm7|chr10 (126520405-126519830) |
|
cki (0.660939) |
|
sto (0.539471) |
|
che (0.408942) |
|
ste (0.405625) |
|
cje (0.330469) |
|
cte (0.29274) |
|
cst (0.280073) |
|
mgp (0.230681) |
|
nms (0.213858) |
|
fcc (0.197785) |
|
col (0.195008) |
|
fbs (0.175346) |
|
sin (0.174948) |
|
duo (0.172801) |
|
eye (0.170503) |
|
cut (0.169924) |
|
fco (0.157208) |
|
bfe (0.149858) |
|
liv (0.146284) |
|
lin (0.145603) |
|
hlv (0.139256) |
|
nca (0.136874) |
|
kid (0.129735) |
|
ova (0.129132) |
|
pgl (0.118483) |
|
med (0.116252) |
|
cki (0.660939) |
|
sto (0.539471) |
|
che (0.408942) |
|
ste (0.405625) |
|
cje (0.330469) |
|
cte (0.29274) |
|
cst (0.280073) |
|
mgp (0.230681) |
|
nms (0.213858) |
|
fcc (0.197785) |
|
col (0.195008) |
|
fbs (0.175346) |
|
sin (0.174948) |
|
duo (0.172801) |
|
eye (0.170503) |
|
cut (0.169924) |
|
fco (0.157208) |
|
bfe (0.149858) |
|
liv (0.146284) |
|
lin (0.145603) |
|
hlv (0.139256) |
|
nca (0.136874) |
|
kid (0.129735) |
|
ova (0.129132) |
|
pgl (0.118483) |
|
med (0.116252) |
