Ss1.1-Pig3-SRG8026N14.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TTGACTGGGGCGACTTTGGGGTGGAGGTGGCCTCTGAAGGGCCCGACTCTGGCATCTCTG CCCAGGCGGCTGAAATTGACTGGGGCATCTCCCTGGAGTCAGACTCAAAGGAAGCTGGGG GTGATGAGATAGACTGGGGAGACGACGCCACTGCTCTGCAGATCACAGTACTGGAAGCCG GAACCCAGGCTCCAGAAGGTGTTGCTAGGGGCTCAGATGCTCTGACCCTTCTTGAATACC CTGAGACCCGGAATCAGTTCATTGATGAGCTCATGGAGCTCGAGAGCTTCCTGTCGCAGA GAGCCGTGGAGATGAGCGAGGAGGCCGACATCCTGTCCGTGAGCCAGTTCCAGCTGGCTC CAGCCATCCTGCAGGGCCAGACCAAAGCGAAGACAGTGAGCATGGTGTCGGCTCTGCAGG ATCTGATCGGCCGCCTCACCAACCTTCGAATGCAACACCTGTTTATGATCCTGGCTTCAC CAAGGTACGTGGACCGAGTGACGGAGCTCCTCCAGCAGAAGCTAAAGCAGTCCCAGCTGC TGGCCTTGAAAAAAGAACTGATGGTGCAGAAGCAGCAGGAAGCGCTTCAGGAGCAGGCGG CTCTGGAGCCCAAGCTGGACCTGCTGCTGGAGAAGACGAAGGAGCTGCAGAAGCTGATCG AAGCTGACATTTCCAAGAGGTACAACGGGCGCCCTGTGAACCTGATGGGAACCTCTCTGT GACACGCTCCCCATTCTTCCTGCCTGTCTTCTCAGCCTTCAGGACAGAGGGGGGACAGCC AGGGGCCCCTCCTGGCAAGGGCTCAGACCCCAGGATGGAACCATCACCGGATGGTGTCCT GGGCGCTCTGTACTCTGCAAGAAGCTGTCTTGAGTGGTCCTGTGGCCCATCAGCCTGAAA CCACAGCTTCTGCTCCTTCTCATTCTCTAGTTGCACTTAATAAAAGAGGAAGGGACTCCT GCTTCACTAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TTGACTGGGGCGACTTTGGGGTGGAGGTGGCCTCTGAAGGGCCCGACTCTGGCATCTCTG CCCAGGCGGCTGAAATTGACTGGGGCATCTCCCTGGAGTCAGACTCAAAGGAAGCTGGGG GTGATGAGATAGACTGGGGAGACGACGCCACTGCTCTGCAGATCACAGTACTGGAAGCCG GAACCCAGGCTCCAGAAGGTGTTGCTAGGGGCTCAGATGCTCTGACCCTTCTTGAATACC CTGAGACCCGGAATCAGTTCATTGATGAGCTCATGGAGCTCGAGAGCTTCCTGTCGCAGA GAGCCGTGGAGATGAGCGAGGAGGCCGACATCCTGTCCGTGAGCCAGTTCCAGCTGGCTC CAGCCATCCTGCAGGGCCAGACCAAAGCGAAGACAGTGAGCATGGTGTCGGCTCTGCAGG ATCTGATCGGCCGCCTCACCAACCTTCGAATGCAACACCTGTTTATGATCCTGGCTTCAC CAAGGTACGTGGACCGAGTGACGGAGCTCCTCCAGCAGAAGCTAAAGCAGTCCCAGCTGC TGGCCTTGAAAAAAGAACTGATGGTGCAGAAGCAGCAGGAAGCGCTTCAGGAGCAGGCGG CTCTGGAGCCCAAGCTGGACCTGCTGCTGGAGAAGACGAAGGAGCTGCAGAAGCTGATCG AAGCTGACATTTCCAAGAGGTACAACGGGCGCCCTGTGAACCTGATGGGAACCTCTCTGT GACACGCTCCCCATTCTTCCTGCCTGTCTTCTCAGCCTTCAGGACAGAGGGGGGACAGCC AGGGGCCCCTCCTGGCAAGGGCTCAGACCCCAGGATGGAACCATCACCGGATGGTGTCCT GGGCGCTCTGTACTCTGCAAGAAGCTGTCTTGAGTGGTCCTGTGGCCCATCAGCCTGAAA CCACAGCTTCTGCTCCTTCTCATTCTCTAGTTGCACTTAATAAAAGAGGAAGGGACTCCT GCTTCACTAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 312-471, - strand, RNAz p=0.853773 | |
| 316-435, + strand, RNAz p=0.86088 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 312-471, - strand, RNAz p=0.853773 | |
| 316-435, + strand, RNAz p=0.86088 |
| Aligned organism(s): 46 entry(ies) | More info |
| Aligned organism(s): 46 entry(ies) | Help | Less info |
| 1-111, gnl|bosTau2|chr19 (31162237-31162127) | |
| 1-111, gnl|canFam2|chr9 (27610095-27610225) | |
| 1-111, gnl|canFam2|chr9 (27610219-27610137) | |
| 1-111, gnl|danRer3|chr12 (23499594-23499461) | |
| 1-111, gnl|echTel1|scaffold_307455 (8865-8735) | |
| 1-111, gnl|echTel1|scaffold_307455 (8741-8823) | |
| 1-111, gnl|fr1|chrUn (226867531-226867662) | |
| 1-111, gnl|fr1|chrUn (226867658-226867579) | |
| 1-111, gnl|hg17|chr17 (43409065-43409195) | |
| 1-111, gnl|Hg17|chr17 (43409078-43409188) | |
| 1-111, gnl|hg17|chr20 (29337391-29337473) | |
| 1-111, gnl|loxAfr1|scaffold_79842 (5655-5525) | |
| 1-111, gnl|loxAfr1|scaffold_79842 (5531-5613) | |
| 1-111, gnl|mm7|chr11 (97020234-97020113) | |
| 1-111, gnl|mm7|chr11 (97020119-97020192) | |
| 1-111, gnl|Mm7|chr11 (97020219-97020118) | |
| 1-111, gnl|monDom2|scaffold_18 (46498356-46498226) | |
| 1-111, gnl|monDom2|scaffold_18 (46498232-46498310) | |
| 1-111, gnl|oryCun1|scaffold_206539 (44408-44282) | |
| 1-111, gnl|oryCun1|scaffold_206539 (44288-44370) | |
| 1-111, gnl|panTro1|chr19_random (42344751-42344881) | |
| 1-111, gnl|panTro1|chr21 (31030827-31030909) | |
| 1-111, gnl|rheMac2|chr16 (32192021-32192151) | |
| 1-111, gnl|rheMac2|chr16 (32192145-32192063) | |
| 1-111, gnl|tetNig1|chr2 (1373492-1373608) | |
| 1-111, gnl|tetNig1|chr2 (1373602-1373523) | |
| 1-111, gnl|xenTro1|scaffold_329 (171057-171181) | |
| 277-486, gnl|bosTau2|chr19 (31159084-31158875) | |
| 277-486, gnl|canFam2|chr9 (27612306-27612503) | |
| 277-486, gnl|danRer3|chr12 (23497494-23497297) | |
| 277-486, gnl|dasNov1|scaffold_96861 (6186-5989) | |
| 277-486, gnl|fr1|chrUn (226868505-226868696) | |
| 277-486, gnl|galGal2|chrUn (117747064-117746876) | |
| 277-486, gnl|hg17|chr17 (43412922-43413130) | |
| 277-486, gnl|Hg17|chr17 (43412956-43413165) | |
| 277-486, gnl|loxAfr1|scaffold_19465 (49227-49040) | |
| 277-486, gnl|mm7|chr11 (97017971-97017788) | |
| 277-486, gnl|Mm7|chr11 (97017960-97017751) | |
| 277-486, gnl|monDom2|scaffold_18 (46495942-46495731) | |
| 277-486, gnl|panTro1|chr19_random (42348620-42348828) | |
| 277-486, gnl|rheMac2|chr16 (32195881-32196089) | |
| 277-486, gnl|tetNig1|chr2 (1374390-1374564) | |
| 277-486, gnl|xenTro1|scaffold_329 (172128-172337) | |
| 656-948, gnl|bosTau2|chr19 (31158244-31157930) | |
| 656-948, gnl|Hg17|chr17 (43413801-43414125) | |
| 656-948, gnl|Mm7|chr11 (97017162-97016863) |
| Aligned organism(s): 46 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-111, gnl|bosTau2|chr19 (31162237-31162127) | |
| 1-111, gnl|canFam2|chr9 (27610095-27610225) | |
| 1-111, gnl|canFam2|chr9 (27610219-27610137) | |
| 1-111, gnl|danRer3|chr12 (23499594-23499461) | |
| 1-111, gnl|echTel1|scaffold_307455 (8865-8735) | |
| 1-111, gnl|echTel1|scaffold_307455 (8741-8823) | |
| 1-111, gnl|fr1|chrUn (226867531-226867662) | |
| 1-111, gnl|fr1|chrUn (226867658-226867579) | |
| 1-111, gnl|hg17|chr17 (43409065-43409195) | |
| 1-111, gnl|Hg17|chr17 (43409078-43409188) | |
| 1-111, gnl|hg17|chr20 (29337391-29337473) | |
| 1-111, gnl|loxAfr1|scaffold_79842 (5655-5525) | |
| 1-111, gnl|loxAfr1|scaffold_79842 (5531-5613) | |
| 1-111, gnl|mm7|chr11 (97020234-97020113) | |
| 1-111, gnl|mm7|chr11 (97020119-97020192) | |
| 1-111, gnl|Mm7|chr11 (97020219-97020118) | |
| 1-111, gnl|monDom2|scaffold_18 (46498356-46498226) | |
| 1-111, gnl|monDom2|scaffold_18 (46498232-46498310) | |
| 1-111, gnl|oryCun1|scaffold_206539 (44408-44282) | |
| 1-111, gnl|oryCun1|scaffold_206539 (44288-44370) | |
| 1-111, gnl|panTro1|chr19_random (42344751-42344881) | |
| 1-111, gnl|panTro1|chr21 (31030827-31030909) | |
| 1-111, gnl|rheMac2|chr16 (32192021-32192151) | |
| 1-111, gnl|rheMac2|chr16 (32192145-32192063) | |
| 1-111, gnl|tetNig1|chr2 (1373492-1373608) | |
| 1-111, gnl|tetNig1|chr2 (1373602-1373523) | |
| 1-111, gnl|xenTro1|scaffold_329 (171057-171181) | |
| 277-486, gnl|bosTau2|chr19 (31159084-31158875) | |
| 277-486, gnl|canFam2|chr9 (27612306-27612503) | |
| 277-486, gnl|danRer3|chr12 (23497494-23497297) | |
| 277-486, gnl|dasNov1|scaffold_96861 (6186-5989) | |
| 277-486, gnl|fr1|chrUn (226868505-226868696) | |
| 277-486, gnl|galGal2|chrUn (117747064-117746876) | |
| 277-486, gnl|hg17|chr17 (43412922-43413130) | |
| 277-486, gnl|Hg17|chr17 (43412956-43413165) | |
| 277-486, gnl|loxAfr1|scaffold_19465 (49227-49040) | |
| 277-486, gnl|mm7|chr11 (97017971-97017788) | |
| 277-486, gnl|Mm7|chr11 (97017960-97017751) | |
| 277-486, gnl|monDom2|scaffold_18 (46495942-46495731) | |
| 277-486, gnl|panTro1|chr19_random (42348620-42348828) | |
| 277-486, gnl|rheMac2|chr16 (32195881-32196089) | |
| 277-486, gnl|tetNig1|chr2 (1374390-1374564) | |
| 277-486, gnl|xenTro1|scaffold_329 (172128-172337) | |
| 656-948, gnl|bosTau2|chr19 (31158244-31157930) | |
| 656-948, gnl|Hg17|chr17 (43413801-43414125) | |
| 656-948, gnl|Mm7|chr11 (97017162-97016863) |
| Expressed library(ies): 5 entry(ies) | More info |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
| fhi (0.508733) | |
| amn (0.417711) | |
| cov (0.132153) | |
| jej (0.0989218) | |
| eje (0.0988338) |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| fhi (0.508733) | |
| amn (0.417711) | |
| cov (0.132153) | |
| jej (0.0989218) | |
| eje (0.0988338) |