Ss1.1-Pig3-SRG8026N18.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AATCTACCGTGACAACTATCCCAGAACTCCCACTGTAAGATGGGGTTATGTGATTATGCA GTTTGCACAGGTTTTTGGTTGCTTTTTTTACGTGTACTACGTCTTTGAAAGACTCTGCAC GCCCTTGTTTCGGAATATCAGACAGGAGCCCTTCAGCGCTCGTGTTCTGGTCTTGTGTAT ATTTAACTCCATCTTGCCAGCTGCGCTGATACTGTTTCTTAGTTTTTTTGCCTTTTTGCA CTGCTGGCTCAATGCCTTTGCTGAGATGTTACGCTTTGGTGACAGGATGTTTTATAAGGA TTGGTGGAACTCCACATCGTATGCTAACTATTACAGGACCTGGAATGTTGTGGTCCATGA CTGGCTGTATTACTATGCTTACAAGGACTTTCTCTGGTTTTTCACAAAGAAGTTCAAACC AGCTGCCATGTTTGCTGTCTTTGCTGTGTCTGCTGTAGTGCACGAATATGCCTTGGCTGT TTGCTTGAATTTTTTCTATCCAGTGCTCTTTGTGCTGTTCATGTTCTTTGGAATGGCTTT CAATTTCATCGTCAATGATAGTCGGAAAAGGCCGATTTGGAACATTCTGATGTGGACTTC CCTTTTTGCTGGCGTTGCCGTCCTCCTGTGCTTTTATTCTCAAGAGTGGTATGCACGGCA GCACTGCCCCCTGAAAAATCCTACATTTCTGGATTATATCCGGCCACGTACCTGGACTTG CCGCTACGTGTTTTAGAAGCTTGGACTTTGGTTCCATCCTTGACGCTGAAGATTGGGTAT CCTGCCTGATTTGAGGCCAGCATCTGTTTCCAGCTATTACTGAAGTTATCTGTATTTTTT GGACCACGCCACACCTTCCAAATGGCTCACTCCACTCCTAGGCCATCTGCAACTGAGCTA TTAGAAGTTGACTGGACGCTTGTACAGTTCTTAATTTTTTACAGCTGTCTCATAGCTGAT GTAATGACAGATTTTTGCTGGATCACATCAGCTTAAGCCTCGGTGATTCTGTTTTGTTTC ATGACTCCATCTAATTAGAGACAGAAATATCATGTTTTCTTGGCCACTGCCTTTAGCCAA AACACTGATGAAGAAATCATTTAAATACCTCTGGCTTAGAAATTTTTTCATTACACTGTT GAAATGTATGCTAATGAACCATTCAGCTGGGAAAGAAAATAATGTGGAATGTTTTGCTGT TTCTAGTAGAAAGAGAGAAAATACCTATTTTTCCAAAGATAATCTTGTTACACATCCTAA TTTGTATTTTTTTTTAAGTTTAGCTCTATTCAGTTTTTACCTTCTTTTGCTGTACAGTAA ATGTCATGATCTTTGCGAAGCAACATTATCCCTTTC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AATCTACCGTGACAACTATCCCAGAACTCCCACTGTAAGATGGGGTTATGTGATTATGCA GTTTGCACAGGTTTTTGGTTGCTTTTTTTACGTGTACTACGTCTTTGAAAGACTCTGCAC GCCCTTGTTTCGGAATATCAGACAGGAGCCCTTCAGCGCTCGTGTTCTGGTCTTGTGTAT ATTTAACTCCATCTTGCCAGCTGCGCTGATACTGTTTCTTAGTTTTTTTGCCTTTTTGCA CTGCTGGCTCAATGCCTTTGCTGAGATGTTACGCTTTGGTGACAGGATGTTTTATAAGGA TTGGTGGAACTCCACATCGTATGCTAACTATTACAGGACCTGGAATGTTGTGGTCCATGA CTGGCTGTATTACTATGCTTACAAGGACTTTCTCTGGTTTTTCACAAAGAAGTTCAAACC AGCTGCCATGTTTGCTGTCTTTGCTGTGTCTGCTGTAGTGCACGAATATGCCTTGGCTGT TTGCTTGAATTTTTTCTATCCAGTGCTCTTTGTGCTGTTCATGTTCTTTGGAATGGCTTT CAATTTCATCGTCAATGATAGTCGGAAAAGGCCGATTTGGAACATTCTGATGTGGACTTC CCTTTTTGCTGGCGTTGCCGTCCTCCTGTGCTTTTATTCTCAAGAGTGGTATGCACGGCA GCACTGCCCCCTGAAAAATCCTACATTTCTGGATTATATCCGGCCACGTACCTGGACTTG CCGCTACGTGTTTTAGAAGCTTGGACTTTGGTTCCATCCTTGACGCTGAAGATTGGGTAT CCTGCCTGATTTGAGGCCAGCATCTGTTTCCAGCTATTACTGAAGTTATCTGTATTTTTT GGACCACGCCACACCTTCCAAATGGCTCACTCCACTCCTAGGCCATCTGCAACTGAGCTA TTAGAAGTTGACTGGACGCTTGTACAGTTCTTAATTTTTTACAGCTGTCTCATAGCTGAT GTAATGACAGATTTTTGCTGGATCACATCAGCTTAAGCCTCGGTGATTCTGTTTTGTTTC ATGACTCCATCTAATTAGAGACAGAAATATCATGTTTTCTTGGCCACTGCCTTTAGCCAA AACACTGATGAAGAAATCATTTAAATACCTCTGGCTTAGAAATTTTTTCATTACACTGTT GAAATGTATGCTAATGAACCATTCAGCTGGGAAAGAAAATAATGTGGAATGTTTTGCTGT TTCTAGTAGAAAGAGAGAAAATACCTATTTTTCCAAAGATAATCTTGTTACACATCCTAA TTTGTATTTTTTTTTAAGTTTAGCTCTATTCAGTTTTTACCTTCTTTTGCTGTACAGTAA ATGTCATGATCTTTGCGAAGCAACATTATCCCTTTC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 948-1040, - strand, RNAz p=0.980881 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 948-1040, - strand, RNAz p=0.980881 |
| Aligned organism(s): 42 entry(ies) | More info |
| Aligned organism(s): 42 entry(ies) | Help | Less info |
| 68-200, gnl|bosTau2|chr16 (46387937-46388069) | |
| 68-200, gnl|canFam2|chr7 (23460228-23460058) | |
| 68-200, gnl|danRer3|chr8 (7720757-7720911) | |
| 68-200, gnl|dasNov1|scaffold_15485 (69311-69141) | |
| 68-200, gnl|echTel1|scaffold_312145 (8407-8245) | |
| 68-200, gnl|fr1|chrUn (206142922-206143090) | |
| 68-200, gnl|hg17|chr1 (176045709-176045879) | |
| 68-200, gnl|Hg17|chr1 (176045736-176045868) | |
| 68-200, gnl|loxAfr1|scaffold_122598 (1210-1380) | |
| 68-200, gnl|mm7|chr1 (156400458-156400297) | |
| 68-200, gnl|Mm7|chr1 (156400438-156400306) | |
| 68-200, gnl|monDom2|scaffold_16 (32157177-32157329) | |
| 68-200, gnl|oryCun1|scaffold_172961 (11336-11501) | |
| 68-200, gnl|panTro1|chr1 (158439470-158439640) | |
| 68-200, gnl|rheMac2|chr1 (191404728-191404558) | |
| 68-200, gnl|rn3|chr13 (71440175-71440013) | |
| 68-200, gnl|tetNig1|chr1 (11079567-11079405) | |
| 68-200, gnl|xenTro1|scaffold_236 (792479-792311) | |
| 388-533, gnl|bosTau2|chr16 (46391779-46391926) | |
| 388-533, gnl|Hg17|chr1 (176051076-176051223) | |
| 388-533, gnl|Mm7|chr1 (156395595-156395449) | |
| 534-679, gnl|bosTau2|chr16 (46392484-46392629) | |
| 534-679, gnl|canFam2|chr7 (23454179-23454068) | |
| 534-679, gnl|danRer3|chr8 (7728595-7728703) | |
| 534-679, gnl|dasNov1|scaffold_1365 (10334-10466) | |
| 534-679, gnl|echTel1|scaffold_312145 (4258-4107) | |
| 534-679, gnl|fr1|chrUn (206144898-206145027) | |
| 534-679, gnl|hg17|chr1 (176052060-176052203) | |
| 534-679, gnl|Hg17|chr1 (176052109-176052254) | |
| 534-679, gnl|loxAfr1|scaffold_46899 (7106-7255) | |
| 534-679, gnl|mm7|chr1 (156394974-156394859) | |
| 534-679, gnl|Mm7|chr1 (156394951-156394806) | |
| 534-679, gnl|monDom2|scaffold_16 (32163504-32163643) | |
| 534-679, gnl|oryCun1|scaffold_172961 (18718-18843) | |
| 534-679, gnl|panTro1|chr1 (158445770-158445913) | |
| 534-679, gnl|rheMac2|chr1 (191398079-191397936) | |
| 534-679, gnl|rn3|chr13 (71435910-71435794) | |
| 534-679, gnl|tetNig1|chr1 (11078682-11078577) | |
| 534-679, gnl|xenTro1|scaffold_236 (790398-790268) | |
| 680-1354, gnl|bosTau2|chr16 (46394450-46395130) | |
| 680-1354, gnl|Hg17|chr1 (176054377-176055078) | |
| 680-1354, gnl|Mm7|chr1 (156393717-156392970) |
| Aligned organism(s): 42 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 68-200, gnl|bosTau2|chr16 (46387937-46388069) | |
| 68-200, gnl|canFam2|chr7 (23460228-23460058) | |
| 68-200, gnl|danRer3|chr8 (7720757-7720911) | |
| 68-200, gnl|dasNov1|scaffold_15485 (69311-69141) | |
| 68-200, gnl|echTel1|scaffold_312145 (8407-8245) | |
| 68-200, gnl|fr1|chrUn (206142922-206143090) | |
| 68-200, gnl|hg17|chr1 (176045709-176045879) | |
| 68-200, gnl|Hg17|chr1 (176045736-176045868) | |
| 68-200, gnl|loxAfr1|scaffold_122598 (1210-1380) | |
| 68-200, gnl|mm7|chr1 (156400458-156400297) | |
| 68-200, gnl|Mm7|chr1 (156400438-156400306) | |
| 68-200, gnl|monDom2|scaffold_16 (32157177-32157329) | |
| 68-200, gnl|oryCun1|scaffold_172961 (11336-11501) | |
| 68-200, gnl|panTro1|chr1 (158439470-158439640) | |
| 68-200, gnl|rheMac2|chr1 (191404728-191404558) | |
| 68-200, gnl|rn3|chr13 (71440175-71440013) | |
| 68-200, gnl|tetNig1|chr1 (11079567-11079405) | |
| 68-200, gnl|xenTro1|scaffold_236 (792479-792311) | |
| 388-533, gnl|bosTau2|chr16 (46391779-46391926) | |
| 388-533, gnl|Hg17|chr1 (176051076-176051223) | |
| 388-533, gnl|Mm7|chr1 (156395595-156395449) | |
| 534-679, gnl|bosTau2|chr16 (46392484-46392629) | |
| 534-679, gnl|canFam2|chr7 (23454179-23454068) | |
| 534-679, gnl|danRer3|chr8 (7728595-7728703) | |
| 534-679, gnl|dasNov1|scaffold_1365 (10334-10466) | |
| 534-679, gnl|echTel1|scaffold_312145 (4258-4107) | |
| 534-679, gnl|fr1|chrUn (206144898-206145027) | |
| 534-679, gnl|hg17|chr1 (176052060-176052203) | |
| 534-679, gnl|Hg17|chr1 (176052109-176052254) | |
| 534-679, gnl|loxAfr1|scaffold_46899 (7106-7255) | |
| 534-679, gnl|mm7|chr1 (156394974-156394859) | |
| 534-679, gnl|Mm7|chr1 (156394951-156394806) | |
| 534-679, gnl|monDom2|scaffold_16 (32163504-32163643) | |
| 534-679, gnl|oryCun1|scaffold_172961 (18718-18843) | |
| 534-679, gnl|panTro1|chr1 (158445770-158445913) | |
| 534-679, gnl|rheMac2|chr1 (191398079-191397936) | |
| 534-679, gnl|rn3|chr13 (71435910-71435794) | |
| 534-679, gnl|tetNig1|chr1 (11078682-11078577) | |
| 534-679, gnl|xenTro1|scaffold_236 (790398-790268) | |
| 680-1354, gnl|bosTau2|chr16 (46394450-46395130) | |
| 680-1354, gnl|Hg17|chr1 (176054377-176055078) | |
| 680-1354, gnl|Mm7|chr1 (156393717-156392970) |
| Expressed library(ies): 11 entry(ies) | More info |
| Expressed library(ies): 11 entry(ies) | Help | Less info |
| sug (0.509165) | |
| clu (0.358938) | |
| ill (0.175593) | |
| rec (0.17307) | |
| eye (0.170503) | |
| lnt (0.142308) | |
| pla (0.133672) | |
| ova (0.129132) | |
| tra (0.123092) | |
| pgl (0.118483) | |
| cty (0.10408) |
| Expressed library(ies): 11 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| sug (0.509165) | |
| clu (0.358938) | |
| ill (0.175593) | |
| rec (0.17307) | |
| eye (0.170503) | |
| lnt (0.142308) | |
| pla (0.133672) | |
| ova (0.129132) | |
| tra (0.123092) | |
| pgl (0.118483) | |
| cty (0.10408) |