Non-Coding RNA Search

Ss1.1-Pig3-SRG8026O24.5

Sequence:


               
               TTTGGCTGAATTGACTGGAATTGGGGCATACTGTGTGATGTAGAAGCTTGTACACCTTTG
TAGTTATAAGACATCCAGACTCCTCATCTTGCACTACACATGATTATGCAAAGTGTATTA
TTCAACCCAGGGGTATGTAGTTAAGACTGTTAAGCTCCTTTTCAGTTACTGCTGCCTATA
GCAGCATTTGTTTCACAAACTAGACATATGGCTTTTTTTTTTGCAGAGTATTATATGGGA
GATGGAAATATTTAACTTATATAGAAATGAAAATATATTTTCATTGGCTGTGGTAACAAA
TAGCATTTTCCATATTGTTTAATTGCACAGATTTTCACACACATATATGAATGTGTACTT
ATCCCCAAATACCAATCTGTCTTGTTTTTCTAAGAATTTTAGAGTTTCCTTTTTAAAAAT
GGACACTGCACCTAGGAATGAATGGCTATTAAATGCAACAAATTTCCTACAGAACAATAT
TCTTCACTTTTCCTCTCTGTTATCTTAGTTTTACCTCTTGAACCAGGAAACCATAAGTGG
ACTGTCATTCACTCAAGCAGCAAAATCTCCGATTATGTGTATTTGATCGAGTTGCTGTGA
TTGAAAATTGCTTTTGGTATTCCACCTTTCCAAAAATGTGTAATTGAAAATGAAATTTAG
GAAAATAATAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTGGCTGAATTGACTGGAATTGGGGCATACTGTGTGATGTAGAAGCTTGTACACCTTTG
TAGTTATAAGACATCCAGACTCCTCATCTTGCACTACACATGATTATGCAAAGTGTATTA
TTCAACCCAGGGGTATGTAGTTAAGACTGTTAAGCTCCTTTTCAGTTACTGCTGCCTATA
GCAGCATTTGTTTCACAAACTAGACATATGGCTTTTTTTTTTGCAGAGTATTATATGGGA
GATGGAAATATTTAACTTATATAGAAATGAAAATATATTTTCATTGGCTGTGGTAACAAA
TAGCATTTTCCATATTGTTTAATTGCACAGATTTTCACACACATATATGAATGTGTACTT
ATCCCCAAATACCAATCTGTCTTGTTTTTCTAAGAATTTTAGAGTTTCCTTTTTAAAAAT
GGACACTGCACCTAGGAATGAATGGCTATTAAATGCAACAAATTTCCTACAGAACAATAT
TCTTCACTTTTCCTCTCTGTTATCTTAGTTTTACCTCTTGAACCAGGAAACCATAAGTGG
ACTGTCATTCACTCAAGCAGCAAAATCTCCGATTATGTGTATTTGATCGAGTTGCTGTGA
TTGAAAATTGCTTTTGGTATTCCACCTTTCCAAAAATGTGTAATTGAAAATGAAATTTAG
GAAAATAATAAA

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               41-160, - strand, RNAz p=0.587884
               

               
               200-319, + strand, RNAz p=0.943395

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               41-160, - strand, RNAz p=0.587884
               

               
               200-319, + strand, RNAz p=0.943395

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               224-327, + strand, RNAmicro p=0.996356

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               224-327, + strand, RNAmicro p=0.996356

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               2-480, gnl|bosTau2|chr9 (6964364-6964838)
               

               
               2-480, gnl|Hg17|chr6 (78226290-78225816)
               

               
               2-480, gnl|Mm7|chr9 (81727230-81726754)
               


               
               525-672, gnl|bosTau2|chr9 (6964839-6964980)
               

               
               525-672, gnl|Hg17|chr6 (78225770-78225627)
               

               
               525-672, gnl|Mm7|chr9 (81726710-81726565)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-480, gnl|bosTau2|chr9 (6964364-6964838)
               

               
               2-480, gnl|Hg17|chr6 (78226290-78225816)
               

               
               2-480, gnl|Mm7|chr9 (81727230-81726754)
               


               
               525-672, gnl|bosTau2|chr9 (6964839-6964980)
               

               
               525-672, gnl|Hg17|chr6 (78225770-78225627)
               

               
               525-672, gnl|Mm7|chr9 (81726710-81726565)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               fco (0.157208)
               

               
               lin (0.145603)
               

               
               tra (0.123092)

Expressed library(ies): 3 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fco (0.157208)
               

               
               lin (0.145603)
               

               
               tra (0.123092)

	41-160, - strand, RNAz p=0.587884
	200-319, + strand, RNAz p=0.943395

	2-480, gnl\|bosTau2\|chr9 (6964364-6964838)
	2-480, gnl\|Hg17\|chr6 (78226290-78225816)
	2-480, gnl\|Mm7\|chr9 (81727230-81726754)

	525-672, gnl\|bosTau2\|chr9 (6964839-6964980)
	525-672, gnl\|Hg17\|chr6 (78225770-78225627)
	525-672, gnl\|Mm7\|chr9 (81726710-81726565)