Ss1.1-Pig3-SRG8026P11.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GTGGCCCGCGAGGCTCGTCGCAGACAACGCGGCGGCGATGTCCGCGAGCCAGGCGAGAGC CGCGGCGGCAGCGGCGGGGCCTCGCGCACGGGAGGGCGACCTGGGCTGCGGCCTCCCTCC GGTTCCTAGGAAGCGGGCCGGCGGCCAGCGCGGGAGCAGCAGCGGCAGAGACGGAGGCTC CGGCGCGTCTCTTTCCTCCCCTTGAGCCTGAGCTGGGGGAGGCCAGGAGGCCCGGGTGGC TGGAGGGGGGTCCGCTGCCCGAGAATGGGAATTCTCTTCACCAGGATATGGAGACTGTTC AATCACCAGGAGCACAAAGTTATCATTGTTGGGCTGGATAATGCAGGAAAAACTACCATC CTTTACCAGTTTTCTATGAATGAAGTTGTACATACGTCCCCTACAATAGGAAGTAATGTA GAAGAGATAGTAATTAATAATACACGTTTTCTGATGTGGGATATTGGTGGCCAAGAATCT CTTCGTTCTTCCTGGAACACTTACTATACTAACACAGAGTTTGTAATAGTTGTTGTGGAC AGTACAGACAGAGAAAGGATTTCTGTAACTAGAGAAGAACTTTATAAAATGTTGGCCCAT GAGGATCTAAGGAAAGCTGGATTGCTGATCTTTGCTAATAAACAAGATGTTAAAGAATGC ATGACTGTAGCAGAAATCTCCCAGTTTTTGAAACTAACTTCTATTAAGGATCACCAGTGG CATATCCAGGCATGCTGTGCTCTTACTGGCGAGGGATTATGCCAAGGACTTGAATGGATG ATGTCACGACTTAAGATTAGATGATCTCTACTGACCTCTGCTCATAGACTTTGTATAAAT GAAGTGCTGGACTTTACCTGAAAGCTGCAAAAATTAATGGTTTAGATATATTTATAATAA ACTGATTTAAACATTTAAACTTTTTCTATAAAAAGAAAAATTAAGACCACTTATTTGAAA ACAAAGATGAAGTCTCACCTTCCAATCTGCTTTTTCGTTAGTTCCTTCCAAAGCAAGGTC TTAAAGCTGTGATTGACGTTTTTCTCATAATGAATCCTCTCAGGACATTGTGTAGCCTGT GGTAAGTACAGAGGGAGAGGAAAGACATTTTCAACTTTAAGAACTTTATTATCGGTATAA CCCTCCCTAGTTGAATGTTTTTCTCGTTCCATTAAGTCAAAATACAAATCAGCACAGATA CTCAGTTTCCAGTATCTTAAAATGTAACGTTACTTATGAAAGGTATTTTGCATAAGGTTG TGTATGTATTGTGTATATACCTCAAGTTCAAGTTAATGGCTTTGATCTATGTTCTTTAAA AAAGCAAATAACGCAGAAATTAATAATATCCTTAGTTATAACCACAGTGAGGTGAGTACT ATACTAGCATTGGTGGTAAGTGCCATTTCGTACTTCCCCTGTGTTCTCTGTATCATACTA ACCAATCCCAAAAATCATTGAGCTGCTCTTTAAAAAAAGAAAGAAAAAGCTTGACATTAT GTACCTAATTTTTGGTTGACCAAATCACATACATGGAAACATATATGTAATCCAGCTGAG TGGGATATCTGTCATATTCCTGACCTATTATTACTAGTGGGCAGAATTGCACATTGAAGC AGTTATCAGATTGTTTCTTTATTGGATCTGTGCCCCCTAAATTACTGAGTAAATTGTTAA TCCATTAATCAGTCAATCATTAATTGTGATTAAAGTTATCAAGTGATTTTTTTTCATTAT TGATTGGAAGCCGTTGTGTGAAATATGTCAACCCAGAGAAATATCACTCTGTAAATACTA TCAAATAACTTAGCCAGAGTCGTCTTGAATATTAAATTATATGTCAAGCATTTGAAGTAA ATTGAGATGAAAAGTAAAGTATATTTTCTAAGCAACAAAAATACTTTCTTAATTTGAAAA TTACTTATTTCTTATCTTAGGAGTTAGAATAGTTTGGGGGTTTTTTTGTGTAAGTTTTCT TTTATTTTCTCATATCACATGATTGCATTGTTTGACAATTACAAGAAAACATCTTTTCTG ATGCTTTTAAGAATTTGGTTTAAATTGATCCACATAATGTATTATTTTTACTAAGAAGTA ACTTGGCCTTGAAGCCTTTTATGTCTGCTAGTGGTTTTTGTTTGTTTCTTTCAGCGTCTG AAAGTCTAAAGTATTTCTGTTGTTAAGTGTAAACAAAATTAACCTAAATGTGTTAAACCG TATTCTTGAGTACTCTGTTGGTGTATCTTTCATGCCGAAAATCTAATGGCTAATGCAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GTGGCCCGCGAGGCTCGTCGCAGACAACGCGGCGGCGATGTCCGCGAGCCAGGCGAGAGC CGCGGCGGCAGCGGCGGGGCCTCGCGCACGGGAGGGCGACCTGGGCTGCGGCCTCCCTCC GGTTCCTAGGAAGCGGGCCGGCGGCCAGCGCGGGAGCAGCAGCGGCAGAGACGGAGGCTC CGGCGCGTCTCTTTCCTCCCCTTGAGCCTGAGCTGGGGGAGGCCAGGAGGCCCGGGTGGC TGGAGGGGGGTCCGCTGCCCGAGAATGGGAATTCTCTTCACCAGGATATGGAGACTGTTC AATCACCAGGAGCACAAAGTTATCATTGTTGGGCTGGATAATGCAGGAAAAACTACCATC CTTTACCAGTTTTCTATGAATGAAGTTGTACATACGTCCCCTACAATAGGAAGTAATGTA GAAGAGATAGTAATTAATAATACACGTTTTCTGATGTGGGATATTGGTGGCCAAGAATCT CTTCGTTCTTCCTGGAACACTTACTATACTAACACAGAGTTTGTAATAGTTGTTGTGGAC AGTACAGACAGAGAAAGGATTTCTGTAACTAGAGAAGAACTTTATAAAATGTTGGCCCAT GAGGATCTAAGGAAAGCTGGATTGCTGATCTTTGCTAATAAACAAGATGTTAAAGAATGC ATGACTGTAGCAGAAATCTCCCAGTTTTTGAAACTAACTTCTATTAAGGATCACCAGTGG CATATCCAGGCATGCTGTGCTCTTACTGGCGAGGGATTATGCCAAGGACTTGAATGGATG ATGTCACGACTTAAGATTAGATGATCTCTACTGACCTCTGCTCATAGACTTTGTATAAAT GAAGTGCTGGACTTTACCTGAAAGCTGCAAAAATTAATGGTTTAGATATATTTATAATAA ACTGATTTAAACATTTAAACTTTTTCTATAAAAAGAAAAATTAAGACCACTTATTTGAAA ACAAAGATGAAGTCTCACCTTCCAATCTGCTTTTTCGTTAGTTCCTTCCAAAGCAAGGTC TTAAAGCTGTGATTGACGTTTTTCTCATAATGAATCCTCTCAGGACATTGTGTAGCCTGT GGTAAGTACAGAGGGAGAGGAAAGACATTTTCAACTTTAAGAACTTTATTATCGGTATAA CCCTCCCTAGTTGAATGTTTTTCTCGTTCCATTAAGTCAAAATACAAATCAGCACAGATA CTCAGTTTCCAGTATCTTAAAATGTAACGTTACTTATGAAAGGTATTTTGCATAAGGTTG TGTATGTATTGTGTATATACCTCAAGTTCAAGTTAATGGCTTTGATCTATGTTCTTTAAA AAAGCAAATAACGCAGAAATTAATAATATCCTTAGTTATAACCACAGTGAGGTGAGTACT ATACTAGCATTGGTGGTAAGTGCCATTTCGTACTTCCCCTGTGTTCTCTGTATCATACTA ACCAATCCCAAAAATCATTGAGCTGCTCTTTAAAAAAAGAAAGAAAAAGCTTGACATTAT GTACCTAATTTTTGGTTGACCAAATCACATACATGGAAACATATATGTAATCCAGCTGAG TGGGATATCTGTCATATTCCTGACCTATTATTACTAGTGGGCAGAATTGCACATTGAAGC AGTTATCAGATTGTTTCTTTATTGGATCTGTGCCCCCTAAATTACTGAGTAAATTGTTAA TCCATTAATCAGTCAATCATTAATTGTGATTAAAGTTATCAAGTGATTTTTTTTCATTAT TGATTGGAAGCCGTTGTGTGAAATATGTCAACCCAGAGAAATATCACTCTGTAAATACTA TCAAATAACTTAGCCAGAGTCGTCTTGAATATTAAATTATATGTCAAGCATTTGAAGTAA ATTGAGATGAAAAGTAAAGTATATTTTCTAAGCAACAAAAATACTTTCTTAATTTGAAAA TTACTTATTTCTTATCTTAGGAGTTAGAATAGTTTGGGGGTTTTTTTGTGTAAGTTTTCT TTTATTTTCTCATATCACATGATTGCATTGTTTGACAATTACAAGAAAACATCTTTTCTG ATGCTTTTAAGAATTTGGTTTAAATTGATCCACATAATGTATTATTTTTACTAAGAAGTA ACTTGGCCTTGAAGCCTTTTATGTCTGCTAGTGGTTTTTGTTTGTTTCTTTCAGCGTCTG AAAGTCTAAAGTATTTCTGTTGTTAAGTGTAAACAAAATTAACCTAAATGTGTTAAACCG TATTCTTGAGTACTCTGTTGGTGTATCTTTCATGCCGAAAATCTAATGGCTAATGCAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 402-519, + strand, RNAz p=0.725855 | |
| 1954-2066, - strand, RNAz p=0.885952 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 402-519, + strand, RNAz p=0.725855 | |
| 1954-2066, - strand, RNAz p=0.885952 |
| Aligned organism(s): 39 entry(ies) | More info |
| Aligned organism(s): 39 entry(ies) | Help | Less info |
| 1-310, gnl|bosTau2|chr2 (29496857-29497166) | |
| 1-310, gnl|Hg17|chr2 (152510462-152510153) | |
| 1-310, gnl|Mm7|chr2 (52432177-52431901) | |
| 372-519, gnl|bosTau2|chr2 (29508397-29508544) | |
| 372-519, gnl|canFam2|chr19 (56000200-56000290) | |
| 372-519, gnl|canFam2|chr19 (56000200-56000348) | |
| 372-519, gnl|danRer3|chr9 (14908697-14908572) | |
| 372-519, gnl|danRer3|chr9 (14908664-14908516) | |
| 372-519, gnl|dasNov1|scaffold_35751 (3333-3421) | |
| 372-519, gnl|dasNov1|scaffold_35751 (3334-3476) | |
| 372-519, gnl|echTel1|scaffold_279345 (46067-45929) | |
| 372-519, gnl|echTel1|scaffold_99060 (916-826) | |
| 372-519, gnl|fr1|chrUn (158677010-158677102) | |
| 372-519, gnl|fr1|chrUn (158677010-158677158) | |
| 372-519, gnl|galGal2|chr7 (35971264-35971412) | |
| 372-519, gnl|hg17|chr1 (68227296-68227384) | |
| 372-519, gnl|hg17|chr2 (152496192-152496340) | |
| 372-519, gnl|Hg17|chr2 (152496338-152496191) | |
| 372-519, gnl|loxAfr1|scaffold_1142 (40519-40667) | |
| 372-519, gnl|loxAfr1|scaffold_14806 (22308-22399) | |
| 372-519, gnl|mm7|chr2 (52423376-52423524) | |
| 372-519, gnl|Mm7|chr2 (52423522-52423375) | |
| 372-519, gnl|mm7|chr3 (27124332-27124408) | |
| 372-519, gnl|monDom2|scaffold_2 (42855783-42855931) | |
| 372-519, gnl|monDom2|scaffold_4 (118714878-118714788) | |
| 372-519, gnl|oryCun1|scaffold_176038 (15161-15014) | |
| 372-519, gnl|oryCun1|scaffold_83402 (2198-2288) | |
| 372-519, gnl|panTro1|chr1 (66788306-66788394) | |
| 372-519, gnl|panTro1|chr13 (41555270-41555418) | |
| 372-519, gnl|rheMac2|chr1 (70841015-70841103) | |
| 372-519, gnl|rheMac2|chr12 (15483672-15483820) | |
| 372-519, gnl|rn3|chr2 (113141325-113141417) | |
| 372-519, gnl|rn3|chr3 (33814170-33814318) | |
| 372-519, gnl|tetNig1|chr2 (18040500-18040592) | |
| 372-519, gnl|tetNig1|chr2 (18040500-18040648) | |
| 372-519, gnl|xenTro1|scaffold_524 (73032-73180) | |
| 755-2280, gnl|bosTau2|chr2 (29519322-29520839) | |
| 755-2280, gnl|Hg17|chr2 (152485347-152483838) | |
| 755-2280, gnl|Mm7|chr2 (52409744-52408353) |
| Aligned organism(s): 39 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-310, gnl|bosTau2|chr2 (29496857-29497166) | |
| 1-310, gnl|Hg17|chr2 (152510462-152510153) | |
| 1-310, gnl|Mm7|chr2 (52432177-52431901) | |
| 372-519, gnl|bosTau2|chr2 (29508397-29508544) | |
| 372-519, gnl|canFam2|chr19 (56000200-56000290) | |
| 372-519, gnl|canFam2|chr19 (56000200-56000348) | |
| 372-519, gnl|danRer3|chr9 (14908697-14908572) | |
| 372-519, gnl|danRer3|chr9 (14908664-14908516) | |
| 372-519, gnl|dasNov1|scaffold_35751 (3333-3421) | |
| 372-519, gnl|dasNov1|scaffold_35751 (3334-3476) | |
| 372-519, gnl|echTel1|scaffold_279345 (46067-45929) | |
| 372-519, gnl|echTel1|scaffold_99060 (916-826) | |
| 372-519, gnl|fr1|chrUn (158677010-158677102) | |
| 372-519, gnl|fr1|chrUn (158677010-158677158) | |
| 372-519, gnl|galGal2|chr7 (35971264-35971412) | |
| 372-519, gnl|hg17|chr1 (68227296-68227384) | |
| 372-519, gnl|hg17|chr2 (152496192-152496340) | |
| 372-519, gnl|Hg17|chr2 (152496338-152496191) | |
| 372-519, gnl|loxAfr1|scaffold_1142 (40519-40667) | |
| 372-519, gnl|loxAfr1|scaffold_14806 (22308-22399) | |
| 372-519, gnl|mm7|chr2 (52423376-52423524) | |
| 372-519, gnl|Mm7|chr2 (52423522-52423375) | |
| 372-519, gnl|mm7|chr3 (27124332-27124408) | |
| 372-519, gnl|monDom2|scaffold_2 (42855783-42855931) | |
| 372-519, gnl|monDom2|scaffold_4 (118714878-118714788) | |
| 372-519, gnl|oryCun1|scaffold_176038 (15161-15014) | |
| 372-519, gnl|oryCun1|scaffold_83402 (2198-2288) | |
| 372-519, gnl|panTro1|chr1 (66788306-66788394) | |
| 372-519, gnl|panTro1|chr13 (41555270-41555418) | |
| 372-519, gnl|rheMac2|chr1 (70841015-70841103) | |
| 372-519, gnl|rheMac2|chr12 (15483672-15483820) | |
| 372-519, gnl|rn3|chr2 (113141325-113141417) | |
| 372-519, gnl|rn3|chr3 (33814170-33814318) | |
| 372-519, gnl|tetNig1|chr2 (18040500-18040592) | |
| 372-519, gnl|tetNig1|chr2 (18040500-18040648) | |
| 372-519, gnl|xenTro1|scaffold_524 (73032-73180) | |
| 755-2280, gnl|bosTau2|chr2 (29519322-29520839) | |
| 755-2280, gnl|Hg17|chr2 (152485347-152483838) | |
| 755-2280, gnl|Mm7|chr2 (52409744-52408353) |
| Expressed library(ies): 13 entry(ies) | More info |
| Expressed library(ies): 13 entry(ies) | Help | Less info |
| pro (0.512033) | |
| vin (0.332557) | |
| pla (0.267344) | |
| tes (0.207814) | |
| sin (0.174948) | |
| fco (0.157208) | |
| tbr (0.154178) | |
| ski (0.146735) | |
| lin (0.145603) | |
| thg (0.126791) | |
| pgl (0.118483) | |
| ecc (0.115035) | |
| spc (0.113366) |
| Expressed library(ies): 13 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| pro (0.512033) | |
| vin (0.332557) | |
| pla (0.267344) | |
| tes (0.207814) | |
| sin (0.174948) | |
| fco (0.157208) | |
| tbr (0.154178) | |
| ski (0.146735) | |
| lin (0.145603) | |
| thg (0.126791) | |
| pgl (0.118483) | |
| ecc (0.115035) | |
| spc (0.113366) |