Ss1.1-Pig3-SRG8027B19.3.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CCGAATAAACCAGCTCTATGAACAAGCCAGATGGGCCATTCTCTTAGAAGAAATCGACTG CACAGAAGAAGAAATGTTGATCTTTGCAGCACTACAGTATCACATTAGCAAACTGTCATT GTCCACTGAAACACAGGATTTTACAAATGAGTCTGAGATCGACGAAGTAGAAGCAGCACT TTCTAATTTGGAAGTGACCCTGGAAGGCGGAAAAGCAGACAGCGCTTTGGAGGACATTAC TGATATCCCTAAACTTGCAGATAATCTCAAATTATTTAGGCCCAAGAAGCTAATATTAAA AGCTTTCAAACAATATTGGTTCGTCTTTAAAGACACATCTATAGCCTACTTTAAAAACAA GGAGCTTGAACAAGGAGAACCAGTAGAAAAACTAAATCTTAGAGGCTGTGAAGTTGTGCC AGACGTAAATGTGGCAGGGAGAAAATTTGGAATCAAGTTACTGATCCCCATTGCTGATGG GATGAATGAAGTGTATCTGAGATGTGACCACGAGACTCAATATGCCCAGTGGATGGCTGC CTGCATCTTGGCATCGAAGGGCAAAACCATGGCAAACAGCTCCTACCAGCCCGAAGTCCT CAATATCCTTTCTTTTCTGAGGATGAAAAACCGGAATGCAACATCTATGATGGCTTCCGG CCTCGAAAACATGGACATGAACCCGGAGTGTTTTGTGTCACCTCGGTGTGCAAAAAAGCA CAAGTCTAAACAGCTGGCAGCCCGCATCCTGGAAGCCCACCAGAACGTGGCCCAGATGCC CCTGGTCGAAGCCAAGCTGCGGTTCATCCAGGCGTGGCAGTCCTTACCGGAATTCGGCCT CACTTACTACCTTGTCAGATTTAAAGGAAGCAAGAAAGATGACATTCTGGGAGTTTCATA TAATAGGTTGATTAGAATCGATGCAAACAGTGGAATTCCAATTACAACATGGAGATTCAC GAATATGAAACAGTGGAATGTAAACTGGGAAATCCGGCAGGTGGCCAT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CCGAATAAACCAGCTCTATGAACAAGCCAGATGGGCCATTCTCTTAGAAGAAATCGACTG CACAGAAGAAGAAATGTTGATCTTTGCAGCACTACAGTATCACATTAGCAAACTGTCATT GTCCACTGAAACACAGGATTTTACAAATGAGTCTGAGATCGACGAAGTAGAAGCAGCACT TTCTAATTTGGAAGTGACCCTGGAAGGCGGAAAAGCAGACAGCGCTTTGGAGGACATTAC TGATATCCCTAAACTTGCAGATAATCTCAAATTATTTAGGCCCAAGAAGCTAATATTAAA AGCTTTCAAACAATATTGGTTCGTCTTTAAAGACACATCTATAGCCTACTTTAAAAACAA GGAGCTTGAACAAGGAGAACCAGTAGAAAAACTAAATCTTAGAGGCTGTGAAGTTGTGCC AGACGTAAATGTGGCAGGGAGAAAATTTGGAATCAAGTTACTGATCCCCATTGCTGATGG GATGAATGAAGTGTATCTGAGATGTGACCACGAGACTCAATATGCCCAGTGGATGGCTGC CTGCATCTTGGCATCGAAGGGCAAAACCATGGCAAACAGCTCCTACCAGCCCGAAGTCCT CAATATCCTTTCTTTTCTGAGGATGAAAAACCGGAATGCAACATCTATGATGGCTTCCGG CCTCGAAAACATGGACATGAACCCGGAGTGTTTTGTGTCACCTCGGTGTGCAAAAAAGCA CAAGTCTAAACAGCTGGCAGCCCGCATCCTGGAAGCCCACCAGAACGTGGCCCAGATGCC CCTGGTCGAAGCCAAGCTGCGGTTCATCCAGGCGTGGCAGTCCTTACCGGAATTCGGCCT CACTTACTACCTTGTCAGATTTAAAGGAAGCAAGAAAGATGACATTCTGGGAGTTTCATA TAATAGGTTGATTAGAATCGATGCAAACAGTGGAATTCCAATTACAACATGGAGATTCAC GAATATGAAACAGTGGAATGTAAACTGGGAAATCCGGCAGGTGGCCAT |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 63 entry(ies) | More info |
| Aligned organism(s): 63 entry(ies) | Help | Less info |
| 96-245, gnl|bosTau2|chr13 (32805142-32805293) | |
| 96-245, gnl|Hg17|chr20 (6025682-6025530) | |
| 96-245, gnl|Mm7|chr2 (132665943-132665792) | |
| 278-405, gnl|bosTau2|chr13 (32820058-32820185) | |
| 278-405, gnl|Hg17|chr20 (6017738-6017611) | |
| 278-405, gnl|Mm7|chr2 (132659485-132659358) | |
| 509-733, gnl|bosTau2|chr10 (46136426-46136202) | |
| 509-733, gnl|canFam2|chr8 (32095158-32095325) | |
| 509-733, gnl|danRer3|chrNA (24595002-24594838) | |
| 509-733, gnl|dasNov1|scaffold_2946 (45253-45420) | |
| 509-733, gnl|echTel1|scaffold_324559 (167-4) | |
| 509-733, gnl|fr1|chrUn (13301137-13300994) | |
| 509-733, gnl|galGal2|chr5 (54935761-54935907) | |
| 509-733, gnl|hg17|chr14 (52400846-52401013) | |
| 509-733, gnl|Hg17|chr14 (52401093-52400869) | |
| 509-733, gnl|loxAfr1|scaffold_12589 (25397-25230) | |
| 509-733, gnl|mm7|chr14 (40783163-40783326) | |
| 509-733, gnl|Mm7|chr14 (40783406-40783182) | |
| 509-733, gnl|monDom2|scaffold_73 (5178190-5178023) | |
| 509-733, gnl|oryCun1|scaffold_100223 (8266-8432) | |
| 509-733, gnl|panTro1|chr15 (51853774-51853941) | |
| 509-733, gnl|rheMac2|chr7 (115885246-115885413) | |
| 509-733, gnl|rn3|chr15 (21364563-21364720) | |
| 509-733, gnl|tetNig1|chr10 (7987208-7987351) | |
| 509-733, gnl|xenTro1|scaffold_355 (1195442-1195262) | |
| 852-1002, gnl|bosTau2|chr13 (32824897-32825047) | |
| 852-1002, gnl|canFam2|chr24 (18779269-18779112) | |
| 852-1002, gnl|danRer3|chrNA (172560005-172560151) | |
| 852-1002, gnl|dasNov1|scaffold_67909 (728-859) | |
| 852-1002, gnl|echTel1|scaffold_204355 (5710-5591) | |
| 852-1002, gnl|fr1|chrUn (204215817-204215969) | |
| 852-1002, gnl|galGal2|chr14 (16929711-16929868) | |
| 852-1002, gnl|hg17|chr20 (6008078-6008235) | |
| 852-1002, gnl|Hg17|chr20 (6008231-6008081) | |
| 852-1002, gnl|loxAfr1|scaffold_4143 (8885-9041) | |
| 852-1002, gnl|mm7|chr2 (132652026-132652182) | |
| 852-1002, gnl|Mm7|chr2 (132652179-132652029) | |
| 852-1002, gnl|monDom2|scaffold_1 (36357906-36358063) | |
| 852-1002, gnl|oryCun1|scaffold_167921 (10914-11070) | |
| 852-1002, gnl|panTro1|chr21 (5890102-5890259) | |
| 852-1002, gnl|rheMac2|chr10 (39380921-39381078) | |
| 852-1002, gnl|rn3|chr3 (120609688-120609844) | |
| 852-1002, gnl|tetNig1|chrUn_random (130958864-130959014) | |
| 852-1002, gnl|xenTro1|scaffold_239 (51383-51545) | |
| 857-993, gnl|bosTau2|chr10 (46132631-46132495) | |
| 857-993, gnl|canFam2|chr8 (32091416-32091580) | |
| 857-993, gnl|danRer3|chrNA (24602371-24602197) | |
| 857-993, gnl|dasNov1|scaffold_2946 (41547-41708) | |
| 857-993, gnl|echTel1|scaffold_324559 (3964-3800) | |
| 857-993, gnl|fr1|chrUn (13304169-13304005) | |
| 857-993, gnl|galGal2|chr5 (54932841-54932999) | |
| 857-993, gnl|hg17|chr14 (52396035-52396202) | |
| 857-993, gnl|Hg17|chr14 (52396184-52396048) | |
| 857-993, gnl|loxAfr1|scaffold_12589 (29552-29396) | |
| 857-993, gnl|mm7|chr14 (40780219-40780383) | |
| 857-993, gnl|Mm7|chr14 (40780368-40780232) | |
| 857-993, gnl|monDom2|scaffold_73 (5185745-5185585) | |
| 857-993, gnl|oryCun1|scaffold_167921 (10916-11087) | |
| 857-993, gnl|panTro1|chr15 (51848937-51849101) | |
| 857-993, gnl|rheMac2|chr7 (115880711-115880875) | |
| 857-993, gnl|rn3|chr15 (21361527-21361691) | |
| 857-993, gnl|tetNig1|chr10 (7984969-7985120) | |
| 857-993, gnl|xenTro1|scaffold_355 (1199469-1199297) |
| Aligned organism(s): 63 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 96-245, gnl|bosTau2|chr13 (32805142-32805293) | |
| 96-245, gnl|Hg17|chr20 (6025682-6025530) | |
| 96-245, gnl|Mm7|chr2 (132665943-132665792) | |
| 278-405, gnl|bosTau2|chr13 (32820058-32820185) | |
| 278-405, gnl|Hg17|chr20 (6017738-6017611) | |
| 278-405, gnl|Mm7|chr2 (132659485-132659358) | |
| 509-733, gnl|bosTau2|chr10 (46136426-46136202) | |
| 509-733, gnl|canFam2|chr8 (32095158-32095325) | |
| 509-733, gnl|danRer3|chrNA (24595002-24594838) | |
| 509-733, gnl|dasNov1|scaffold_2946 (45253-45420) | |
| 509-733, gnl|echTel1|scaffold_324559 (167-4) | |
| 509-733, gnl|fr1|chrUn (13301137-13300994) | |
| 509-733, gnl|galGal2|chr5 (54935761-54935907) | |
| 509-733, gnl|hg17|chr14 (52400846-52401013) | |
| 509-733, gnl|Hg17|chr14 (52401093-52400869) | |
| 509-733, gnl|loxAfr1|scaffold_12589 (25397-25230) | |
| 509-733, gnl|mm7|chr14 (40783163-40783326) | |
| 509-733, gnl|Mm7|chr14 (40783406-40783182) | |
| 509-733, gnl|monDom2|scaffold_73 (5178190-5178023) | |
| 509-733, gnl|oryCun1|scaffold_100223 (8266-8432) | |
| 509-733, gnl|panTro1|chr15 (51853774-51853941) | |
| 509-733, gnl|rheMac2|chr7 (115885246-115885413) | |
| 509-733, gnl|rn3|chr15 (21364563-21364720) | |
| 509-733, gnl|tetNig1|chr10 (7987208-7987351) | |
| 509-733, gnl|xenTro1|scaffold_355 (1195442-1195262) | |
| 852-1002, gnl|bosTau2|chr13 (32824897-32825047) | |
| 852-1002, gnl|canFam2|chr24 (18779269-18779112) | |
| 852-1002, gnl|danRer3|chrNA (172560005-172560151) | |
| 852-1002, gnl|dasNov1|scaffold_67909 (728-859) | |
| 852-1002, gnl|echTel1|scaffold_204355 (5710-5591) | |
| 852-1002, gnl|fr1|chrUn (204215817-204215969) | |
| 852-1002, gnl|galGal2|chr14 (16929711-16929868) | |
| 852-1002, gnl|hg17|chr20 (6008078-6008235) | |
| 852-1002, gnl|Hg17|chr20 (6008231-6008081) | |
| 852-1002, gnl|loxAfr1|scaffold_4143 (8885-9041) | |
| 852-1002, gnl|mm7|chr2 (132652026-132652182) | |
| 852-1002, gnl|Mm7|chr2 (132652179-132652029) | |
| 852-1002, gnl|monDom2|scaffold_1 (36357906-36358063) | |
| 852-1002, gnl|oryCun1|scaffold_167921 (10914-11070) | |
| 852-1002, gnl|panTro1|chr21 (5890102-5890259) | |
| 852-1002, gnl|rheMac2|chr10 (39380921-39381078) | |
| 852-1002, gnl|rn3|chr3 (120609688-120609844) | |
| 852-1002, gnl|tetNig1|chrUn_random (130958864-130959014) | |
| 852-1002, gnl|xenTro1|scaffold_239 (51383-51545) | |
| 857-993, gnl|bosTau2|chr10 (46132631-46132495) | |
| 857-993, gnl|canFam2|chr8 (32091416-32091580) | |
| 857-993, gnl|danRer3|chrNA (24602371-24602197) | |
| 857-993, gnl|dasNov1|scaffold_2946 (41547-41708) | |
| 857-993, gnl|echTel1|scaffold_324559 (3964-3800) | |
| 857-993, gnl|fr1|chrUn (13304169-13304005) | |
| 857-993, gnl|galGal2|chr5 (54932841-54932999) | |
| 857-993, gnl|hg17|chr14 (52396035-52396202) | |
| 857-993, gnl|Hg17|chr14 (52396184-52396048) | |
| 857-993, gnl|loxAfr1|scaffold_12589 (29552-29396) | |
| 857-993, gnl|mm7|chr14 (40780219-40780383) | |
| 857-993, gnl|Mm7|chr14 (40780368-40780232) | |
| 857-993, gnl|monDom2|scaffold_73 (5185745-5185585) | |
| 857-993, gnl|oryCun1|scaffold_167921 (10916-11087) | |
| 857-993, gnl|panTro1|chr15 (51848937-51849101) | |
| 857-993, gnl|rheMac2|chr7 (115880711-115880875) | |
| 857-993, gnl|rn3|chr15 (21361527-21361691) | |
| 857-993, gnl|tetNig1|chr10 (7984969-7985120) | |
| 857-993, gnl|xenTro1|scaffold_355 (1199469-1199297) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cty (0.20816) |