Ss1.1-Pig3-SRG8027C02.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GACAAAAACGGAGGCAGCCAAGGCGGAAGGTGCTGCACCAGCCTCATCAGAGGAGACACG CCTGGAATCTGCTGCTGTCCCCAAGGCTGCCTGCCCTCTGGACTCTGAGGGAGCAGAAGG GGCCATCCCCCCAGCTTCTGGGGGTGGCAGAGTGCAGAACTCACCCCCCGTCGGAAGGAA AACCTTGCCTCCGGCCACGGCCCCCGAGGCAGCGGAGGTGACCCCATCAGAGAGTGGGGA GCAGGAGGACCCCCCAGCCAAAGGCCTCTCGGTGAGGCTGGAGTTTGACTATTCTGAGGA CAAGAGTAGTTGGGACCCACCAGCAGGAAAACCCCCCTCCCACCAAAAAGATAGGCAAAA AGCCAGTTGCCAAAATGCCCCTAAGGAGGCCAAAGA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GACAAAAACGGAGGCAGCCAAGGCGGAAGGTGCTGCACCAGCCTCATCAGAGGAGACACG CCTGGAATCTGCTGCTGTCCCCAAGGCTGCCTGCCCTCTGGACTCTGAGGGAGCAGAAGG GGCCATCCCCCCAGCTTCTGGGGGTGGCAGAGTGCAGAACTCACCCCCCGTCGGAAGGAA AACCTTGCCTCCGGCCACGGCCCCCGAGGCAGCGGAGGTGACCCCATCAGAGAGTGGGGA GCAGGAGGACCCCCCAGCCAAAGGCCTCTCGGTGAGGCTGGAGTTTGACTATTCTGAGGA CAAGAGTAGTTGGGACCCACCAGCAGGAAAACCCCCCTCCCACCAAAAAGATAGGCAAAA AGCCAGTTGCCAAAATGCCCCTAAGGAGGCCAAAGA |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 81-360, - strand, RNAz p=0.976567 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 81-360, - strand, RNAz p=0.976567 |
| Predicted microRNA(s): 2 entry(ies) | More info |
| Predicted microRNA(s): 2 entry(ies) | Help | Less info |
| 117-245, - strand, RNAmicro p=0.999884 | |
| 116-228, + strand, RNAmicro p=0.981869 |
| Predicted microRNA(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro
| 117-245, - strand, RNAmicro p=0.999884 | |
| 116-228, + strand, RNAmicro p=0.981869 |
| Aligned organism(s): 3 entry(ies) | More info |
| Aligned organism(s): 3 entry(ies) | Help | Less info |
| 2-396, gnl|bosTau2|chr26 (29636000-29635607) | |
| 2-396, gnl|Hg17|chr10 (123960447-123960840) | |
| 2-396, gnl|Mm7|chr7 (127048708-127049101) |
| Aligned organism(s): 3 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 2-396, gnl|bosTau2|chr26 (29636000-29635607) | |
| 2-396, gnl|Hg17|chr10 (123960447-123960840) | |
| 2-396, gnl|Mm7|chr7 (127048708-127049101) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| amn (0.417711) |