Non-Coding RNA Search

Ss1.1-Pig3-SRG8027F13.3

Sequence:


               
               GCTGGGCTCCAGCTCAGCTGTACTCTGCACTGGGCCTACCTCCTCCCCCGTGTCCGGGGC
TTCCGGATCCACTGGGCATGGGGACTCGAAGAGTCTGCTATGGCCAGGAGGAGGCGGTGG
GGCCCTGGTACCACCCGAGTGCCCAGGAAATCCAGCCCCTGTTTGGAGAGCACAGGCTGG
AAGAGGACGGACGGGGCTGGGTGAAGACGCGCTGCTGTCTGGCAGACGCCTGGCACGGGG
GCAGCTCTCTGCTCATCCGGGGGCTGATTCCGCCCGGGCAGGGCGGCCATGCTCTACTCC
ACGCCCCGCACGTGAGCAGAATTACAGCACAGCGTCTCCTGTCTCCAGCCGAGGCCCCCA
CTGTGTGCGGGGAAGACGTGGGTCCTGAGGGCTGGGCTCAGGAGAGGAAAACTGAGAAGC
CATAATTCCCAAGGGTGAATCCCCTGCTTTTTGTCTAATCCCTTTCTGTAGTGTCTACTC
CACAGATACACGGGAAAGGATTTGGAAAAGCTTAGTCCAGAAAATTCCATAAAGGGTATT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCTGGGCTCCAGCTCAGCTGTACTCTGCACTGGGCCTACCTCCTCCCCCGTGTCCGGGGC
TTCCGGATCCACTGGGCATGGGGACTCGAAGAGTCTGCTATGGCCAGGAGGAGGCGGTGG
GGCCCTGGTACCACCCGAGTGCCCAGGAAATCCAGCCCCTGTTTGGAGAGCACAGGCTGG
AAGAGGACGGACGGGGCTGGGTGAAGACGCGCTGCTGTCTGGCAGACGCCTGGCACGGGG
GCAGCTCTCTGCTCATCCGGGGGCTGATTCCGCCCGGGCAGGGCGGCCATGCTCTACTCC
ACGCCCCGCACGTGAGCAGAATTACAGCACAGCGTCTCCTGTCTCCAGCCGAGGCCCCCA
CTGTGTGCGGGGAAGACGTGGGTCCTGAGGGCTGGGCTCAGGAGAGGAAAACTGAGAAGC
CATAATTCCCAAGGGTGAATCCCCTGCTTTTTGTCTAATCCCTTTCTGTAGTGTCTACTC
CACAGATACACGGGAAAGGATTTGGAAAAGCTTAGTCCAGAAAATTCCATAAAGGGTATT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               105-223, + strand, RNAz p=0.76766

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               105-223, + strand, RNAz p=0.76766

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               105-276, gnl|bosTau2|chr19 (46314376-46314547)
               

               
               105-276, gnl|Hg17|chr17 (74591435-74591606)
               

               
               105-276, gnl|Mm7|chr11 (118594166-118594337)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               105-276, gnl|bosTau2|chr19 (46314376-46314547)
               

               
               105-276, gnl|Hg17|chr17 (74591435-74591606)
               

               
               105-276, gnl|Mm7|chr11 (118594166-118594337)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ill (0.175593)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ill (0.175593)

	105-276, gnl\|bosTau2\|chr19 (46314376-46314547)
	105-276, gnl\|Hg17\|chr17 (74591435-74591606)
	105-276, gnl\|Mm7\|chr11 (118594166-118594337)