Non-Coding RNA Search

Ss1.1-Pig3-SRG8027G10.5

Sequence:


               
               CAGCATGAGAATGCTCATACTGGAGAGAAACCTTATCAGTGTAGTCTCTGTGGGAAAGCC
TTCCAGCGCAGCTCCTCCCTTGTTCAACACCAGAGAATCATACTGGAGAGAAACCCTATC
GATGTAATTTGTGTGGGAGGTCTTTGAGGCATGGCACATCCCTCACCCAGCACGAGGTCA
CACATAGTGGAGAGAAACCCTTCCAGTGTAAGGAATGTGGGAAAGCCTTTAGTCGATGTT
CCTCCCTTGTCCAGCATGAGAGGACTCATACAGGAGAGAAACCTTTTGAATGTAGCATAT
GTGGGAGGGCTTTTGGTCAGAGCCCATCCCTTTATAAACATATGAGAATTCATAAGAGAG
GCGAACCTTACCAAAGCAATAACTATGGCATAGATTTCAAGCACACCTCATTACTTACTC
AAGATGAAAGCACTCTCACTGAGGTGAAATCCTATCATTGCGATGAGTGTGGGGAAGACT
TCAGTCACATCACAGACTTTTCTGAGCCGGGGAGGAGTCACACTGGAGAGAAGCGGGATG
ATTGTGAGCAGGCCTTTAGTCAACAATCCATTTCTT------------AACCCTATCAAT
GTAATGTATGTGGGAAAGCTTTCAAAAGGAGTACGAGTTTCATAGAGCATCACAGAATTC
ATACTGGAGAAAAACCCTATGAATGTAATGAATGTGGAGAAGCCTTCAGTCGACGTTCAT
CACTGACTCAACATGAGAGGACCCACACTGGAGAGAAACCCTATGAATGTATTGACTGTG
GGAAAGCCTTTAGTCAGAGTTCATCCCTCATTCAGCATGAGAGAACTCATACTGGAGAAA
AACCCTATGAAT------------------------GAAAGAAAACCAATCTGCATGATC
ATCAAAGAATCCATACTGGAGAAAAACCCTATACTTGTAAGGAATGTGGGAAAAACTTCA
GCCGGAGCTCAGCTCTTACTAAACATCAGAGAATTCATACACGAAATAAACTCTAGGAAC
CCTGACATTAAGGAATGTCCTGAAAGCTTTAGGCAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAGCATGAGAATGCTCATACTGGAGAGAAACCTTATCAGTGTAGTCTCTGTGGGAAAGCC
TTCCAGCGCAGCTCCTCCCTTGTTCAACACCAGAGAATCATACTGGAGAGAAACCCTATC
GATGTAATTTGTGTGGGAGGTCTTTGAGGCATGGCACATCCCTCACCCAGCACGAGGTCA
CACATAGTGGAGAGAAACCCTTCCAGTGTAAGGAATGTGGGAAAGCCTTTAGTCGATGTT
CCTCCCTTGTCCAGCATGAGAGGACTCATACAGGAGAGAAACCTTTTGAATGTAGCATAT
GTGGGAGGGCTTTTGGTCAGAGCCCATCCCTTTATAAACATATGAGAATTCATAAGAGAG
GCGAACCTTACCAAAGCAATAACTATGGCATAGATTTCAAGCACACCTCATTACTTACTC
AAGATGAAAGCACTCTCACTGAGGTGAAATCCTATCATTGCGATGAGTGTGGGGAAGACT
TCAGTCACATCACAGACTTTTCTGAGCCGGGGAGGAGTCACACTGGAGAGAAGCGGGATG
ATTGTGAGCAGGCCTTTAGTCAACAATCCATTTCTT------------AACCCTATCAAT
GTAATGTATGTGGGAAAGCTTTCAAAAGGAGTACGAGTTTCATAGAGCATCACAGAATTC
ATACTGGAGAAAAACCCTATGAATGTAATGAATGTGGAGAAGCCTTCAGTCGACGTTCAT
CACTGACTCAACATGAGAGGACCCACACTGGAGAGAAACCCTATGAATGTATTGACTGTG
GGAAAGCCTTTAGTCAGAGTTCATCCCTCATTCAGCATGAGAGAACTCATACTGGAGAAA
AACCCTATGAAT------------------------GAAAGAAAACCAATCTGCATGATC
ATCAAAGAATCCATACTGGAGAAAAACCCTATACTTGTAAGGAATGTGGGAAAAACTTCA
GCCGGAGCTCAGCTCTTACTAAACATCAGAGAATTCATACACGAAATAAACTCTAGGAAC
CCTGACATTAAGGAATGTCCTGAAAGCTTTAGGCAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|38605597|sp|Q8TF47|ZFP90_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|38605597|sp|Q8TF47|ZFP90_HUMAN

Aligned organism(s): 10 entry(ies)

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Aligned organism(s): 10 entry(ies)

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               4-551, gnl|bosTau2|chr14 (25836364-25836912)
               

               
               4-551, gnl|Hg17|chr19 (49303237-49303953)
               

               
               4-551, gnl|Mm7|chr7 (20914057-20914586)
               


               
               15-548, gnl|bosTau2|chr10 (8996604-8996070)
               

               
               15-548, gnl|Hg17|chr19 (42818409-42817791)
               

               
               15-548, gnl|Mm7|chr2 (127310035-127309585)
               


               
               577-983, gnl|bosTau2|chr18 (43093987-43093569)
               


               
               579-979, gnl|bosTau2|chr10 (9031337-9031742)
               

               
               579-979, gnl|Hg17|chr2 (95236754-95236429)
               

               
               579-979, gnl|Mm7|chr5 (6465654-6465311)

Aligned organism(s): 10 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               4-551, gnl|bosTau2|chr14 (25836364-25836912)
               

               
               4-551, gnl|Hg17|chr19 (49303237-49303953)
               

               
               4-551, gnl|Mm7|chr7 (20914057-20914586)
               


               
               15-548, gnl|bosTau2|chr10 (8996604-8996070)
               

               
               15-548, gnl|Hg17|chr19 (42818409-42817791)
               

               
               15-548, gnl|Mm7|chr2 (127310035-127309585)
               


               
               577-983, gnl|bosTau2|chr18 (43093987-43093569)
               


               
               579-979, gnl|bosTau2|chr10 (9031337-9031742)
               

               
               579-979, gnl|Hg17|chr2 (95236754-95236429)
               

               
               579-979, gnl|Mm7|chr5 (6465654-6465311)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ste (0.135208)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ste (0.135208)

	4-551, gnl\|bosTau2\|chr14 (25836364-25836912)
	4-551, gnl\|Hg17\|chr19 (49303237-49303953)
	4-551, gnl\|Mm7\|chr7 (20914057-20914586)

	15-548, gnl\|bosTau2\|chr10 (8996604-8996070)
	15-548, gnl\|Hg17\|chr19 (42818409-42817791)
	15-548, gnl\|Mm7\|chr2 (127310035-127309585)

	577-983, gnl\|bosTau2\|chr18 (43093987-43093569)

	579-979, gnl\|bosTau2\|chr10 (9031337-9031742)
	579-979, gnl\|Hg17\|chr2 (95236754-95236429)
	579-979, gnl\|Mm7\|chr5 (6465654-6465311)