Ss1.1-Pig3-SRG8027H10.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CACGCCTACATCATCAGCTCCCTCAAGAAGGAGATGCCCAATGTCTTCGGCAAAGAGAGC AAGAAGAAAGAGCTGGTCAACAACCTGGGCGAGATCTACCAGAAGATCGAGCGCGAGCAC CAGATCTCCCCCGGCGACTTCCCCAGCCTCCGCAAGATGCAGGAGCTCCTGCAGTCCCAG GACTTCAGCAAGTTCCAGGCCCTGAAGCCCAAGCTGCTGGACACAGTGGACGACATGCTG GCCAACGACATCGCCCGGCTGATGGTCATGGTGCGTCAGGAGGAGTCCCTGATGCCCGCC CAGGCCGTGAAGGGCGGCGCCTTCGAAGGCACCATGAACGGGCCCTTCGGGCACGGCTAC GGCGAGGGGGCCGGCGAGGGCATTGACGACGTCGAGTGGGTGGTGGGCAAGGACAAGCCC ACCTACGACGAGATCTTCTACACGCTGTCGCCCGTCAACGGCAAGATCACGGGCGCCAAC GCCAAGAAGGAGATGGTGAAGTCCAAGCTGCCCAACACGGTGCTGGGCAAGATCTGGAAG CTGGCCGACGTGGACCGGGACGGGCTGCTGGACGACGAGGAGTTCGCCCTGGCCAACCAC CTCATCAAAGTCAAGCTGGAGGGCCACGAGCTGCCCGCCGACCTGCCCCCGCACCTGATC CCGCCCTCCAAGCGGAGGCCCCAGTGACCGCGGCCCCGCCGGCCGAGTCGGCCGCCTCCG TGCCGGCCCCGCAGCGGCTGGGGGAGCGGAGGGGCGGCGGTTCCCAAGCCCACAAGGACC GAGCCCTGTTGCCGCAGCTCGCAAAGGAAAACCACCGTCTTTCTCTTAAGGCTGCTGCCA GGGAGGCCGGGGTGATCCTTACATGTGAAGGGTGGAATTTTGTGCATAAGAACTACGGAT ATTTTTAATATATAACGTTAGAGG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CACGCCTACATCATCAGCTCCCTCAAGAAGGAGATGCCCAATGTCTTCGGCAAAGAGAGC AAGAAGAAAGAGCTGGTCAACAACCTGGGCGAGATCTACCAGAAGATCGAGCGCGAGCAC CAGATCTCCCCCGGCGACTTCCCCAGCCTCCGCAAGATGCAGGAGCTCCTGCAGTCCCAG GACTTCAGCAAGTTCCAGGCCCTGAAGCCCAAGCTGCTGGACACAGTGGACGACATGCTG GCCAACGACATCGCCCGGCTGATGGTCATGGTGCGTCAGGAGGAGTCCCTGATGCCCGCC CAGGCCGTGAAGGGCGGCGCCTTCGAAGGCACCATGAACGGGCCCTTCGGGCACGGCTAC GGCGAGGGGGCCGGCGAGGGCATTGACGACGTCGAGTGGGTGGTGGGCAAGGACAAGCCC ACCTACGACGAGATCTTCTACACGCTGTCGCCCGTCAACGGCAAGATCACGGGCGCCAAC GCCAAGAAGGAGATGGTGAAGTCCAAGCTGCCCAACACGGTGCTGGGCAAGATCTGGAAG CTGGCCGACGTGGACCGGGACGGGCTGCTGGACGACGAGGAGTTCGCCCTGGCCAACCAC CTCATCAAAGTCAAGCTGGAGGGCCACGAGCTGCCCGCCGACCTGCCCCCGCACCTGATC CCGCCCTCCAAGCGGAGGCCCCAGTGACCGCGGCCCCGCCGGCCGAGTCGGCCGCCTCCG TGCCGGCCCCGCAGCGGCTGGGGGAGCGGAGGGGCGGCGGTTCCCAAGCCCACAAGGACC GAGCCCTGTTGCCGCAGCTCGCAAAGGAAAACCACCGTCTTTCTCTTAAGGCTGCTGCCA GGGAGGCCGGGGTGATCCTTACATGTGAAGGGTGGAATTTTGTGCATAAGAACTACGGAT ATTTTTAATATATAACGTTAGAGG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 279-398, + strand, RNAz p=0.655868 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 279-398, + strand, RNAz p=0.655868 |
| Aligned organism(s): 22 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
| 1-145, gnl|bosTau2|chr10 (25041567-25041711) | |
| 1-145, gnl|canFam2|chr30 (11929264-11929462) | |
| 1-145, gnl|danRer3|chrNA (42387118-42386949) | |
| 1-145, gnl|dasNov1|scaffold_15830 (5838-6031) | |
| 1-145, gnl|echTel1|scaffold_302429 (11148-10948) | |
| 1-145, gnl|fr1|chrUn (254165190-254165379) | |
| 1-145, gnl|galGal2|chr5 (22561542-22561737) | |
| 1-145, gnl|hg17|chr15 (39989173-39989374) | |
| 1-145, gnl|Hg17|chr15 (39989350-39989206) | |
| 1-145, gnl|loxAfr1|scaffold_33768 (5199-4998) | |
| 1-145, gnl|mm7|chr2 (119837795-119837995) | |
| 1-145, gnl|Mm7|chr2 (119837973-119837829) | |
| 1-145, gnl|monDom2|scaffold_53 (12767047-12766864) | |
| 1-145, gnl|oryCun1|scaffold_213649 (1568-1755) | |
| 1-145, gnl|panTro1|chr16_random (11652933-11652732) | |
| 1-145, gnl|rheMac2|chr7 (20327788-20327989) | |
| 1-145, gnl|rn3|chr3 (106498659-106498859) | |
| 1-145, gnl|tetNig1|chrUn_random (108056246-108056422) | |
| 1-145, gnl|xenTro1|scaffold_33 (2481858-2481668) | |
| 160-681, gnl|bosTau2|chr10 (25048165-25048686) | |
| 160-681, gnl|Hg17|chr15 (39980674-39980153) | |
| 160-681, gnl|Mm7|chr2 (119832535-119832015) |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-145, gnl|bosTau2|chr10 (25041567-25041711) | |
| 1-145, gnl|canFam2|chr30 (11929264-11929462) | |
| 1-145, gnl|danRer3|chrNA (42387118-42386949) | |
| 1-145, gnl|dasNov1|scaffold_15830 (5838-6031) | |
| 1-145, gnl|echTel1|scaffold_302429 (11148-10948) | |
| 1-145, gnl|fr1|chrUn (254165190-254165379) | |
| 1-145, gnl|galGal2|chr5 (22561542-22561737) | |
| 1-145, gnl|hg17|chr15 (39989173-39989374) | |
| 1-145, gnl|Hg17|chr15 (39989350-39989206) | |
| 1-145, gnl|loxAfr1|scaffold_33768 (5199-4998) | |
| 1-145, gnl|mm7|chr2 (119837795-119837995) | |
| 1-145, gnl|Mm7|chr2 (119837973-119837829) | |
| 1-145, gnl|monDom2|scaffold_53 (12767047-12766864) | |
| 1-145, gnl|oryCun1|scaffold_213649 (1568-1755) | |
| 1-145, gnl|panTro1|chr16_random (11652933-11652732) | |
| 1-145, gnl|rheMac2|chr7 (20327788-20327989) | |
| 1-145, gnl|rn3|chr3 (106498659-106498859) | |
| 1-145, gnl|tetNig1|chrUn_random (108056246-108056422) | |
| 1-145, gnl|xenTro1|scaffold_33 (2481858-2481668) | |
| 160-681, gnl|bosTau2|chr10 (25048165-25048686) | |
| 160-681, gnl|Hg17|chr15 (39980674-39980153) | |
| 160-681, gnl|Mm7|chr2 (119832535-119832015) |
| Expressed library(ies): 8 entry(ies) | More info |
| Expressed library(ies): 8 entry(ies) | Help | Less info |
| nms (0.427716) | |
| pla (0.267344) | |
| csp (0.161186) | |
| cli (0.152812) | |
| cag (0.151194) | |
| cly (0.120642) | |
| jej (0.0989218) | |
| eje (0.0988338) |
| Expressed library(ies): 8 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nms (0.427716) | |
| pla (0.267344) | |
| csp (0.161186) | |
| cli (0.152812) | |
| cag (0.151194) | |
| cly (0.120642) | |
| jej (0.0989218) | |
| eje (0.0988338) |