Non-Coding RNA Search

Ss1.1-Pig3-SRG8027J22.3

Sequence:


               
               GTTGTATTTGCACTTTACACAAATCTGTAAAAAAAAAGGATAAATTTACTCTCACTTTAT
TTTCAGGATGACCTTCAAGGGAAAAATGTGCAATTCAAAAGATTAATGTGGGTTAAAACA
CCTTCTTTAGGAGTTCATGTTGTGGTTTAGTGGGTTAAGGCCCCAACGTTATCTTTGTGA
GAATGCAGGTCCGTCTCTGGTCTTGCCAGTGGGGAAAGGATCCAGCGTTGCCGCAAGCTG
TGGCATAGGTCACAGATGCAGCTCAGATCCAGTGTTGCTGTGGCATAGGCCTCAGCTGCA
GCTAGAATTCAACTCCTGGCCCAGGAATTTCCATATGCTACAGGTGTGGCTATAAAAAGA
AGAAAAACAAAAAACATAAAACCTCATTTATCTTAATTATATCTCTATCATGTTTTTATT
AATATTTGTGAAAGAAGATAGCCTAACAGTAGTTAGCTTCAGTAGTTACTCCAAATACTT
TTGTGTTATCAAAAATTTAATTGAAACATAAAGATGGAAACCATTTTCTCTTACTACTTT
AAGGAACTCAATCTTTTGTCCTCATATTTTTGTTTCTTCTTTTCATATTTTATAGCTCCT
TACCCAAATGTATAAAGAAATAGCATTTTAAGAATAGCTTAAATTAGAATCTCACACAAC
CTTTAGTCAAGTGGTAATTTGAGTTTATTACTGGATGGTTTAAAATTAGCTTTAGTATTA
GCATGCCAATCTCATGCCTAATATTATTATACGCTATGGTGAATACCCAGTTGTGGAGCT
CAGTTCTTGATTGTATGATTACTTATGTAAATTCTATACAAAATTAAGTTCAATGAAACA
TTTATTTAACATATTGAAAAGTAGATAGCACCATATTTAGTTATTTTCTATCTTGTTTCA
AGTTTATTTTTATTGTATATTTTCAACATTAAATACTAAATTATTTTCATTTAGATGATT
CATTTCACTGAATTTAGTAATAGTCAATAAAAATTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTTGTATTTGCACTTTACACAAATCTGTAAAAAAAAAGGATAAATTTACTCTCACTTTAT
TTTCAGGATGACCTTCAAGGGAAAAATGTGCAATTCAAAAGATTAATGTGGGTTAAAACA
CCTTCTTTAGGAGTTCATGTTGTGGTTTAGTGGGTTAAGGCCCCAACGTTATCTTTGTGA
GAATGCAGGTCCGTCTCTGGTCTTGCCAGTGGGGAAAGGATCCAGCGTTGCCGCAAGCTG
TGGCATAGGTCACAGATGCAGCTCAGATCCAGTGTTGCTGTGGCATAGGCCTCAGCTGCA
GCTAGAATTCAACTCCTGGCCCAGGAATTTCCATATGCTACAGGTGTGGCTATAAAAAGA
AGAAAAACAAAAAACATAAAACCTCATTTATCTTAATTATATCTCTATCATGTTTTTATT
AATATTTGTGAAAGAAGATAGCCTAACAGTAGTTAGCTTCAGTAGTTACTCCAAATACTT
TTGTGTTATCAAAAATTTAATTGAAACATAAAGATGGAAACCATTTTCTCTTACTACTTT
AAGGAACTCAATCTTTTGTCCTCATATTTTTGTTTCTTCTTTTCATATTTTATAGCTCCT
TACCCAAATGTATAAAGAAATAGCATTTTAAGAATAGCTTAAATTAGAATCTCACACAAC
CTTTAGTCAAGTGGTAATTTGAGTTTATTACTGGATGGTTTAAAATTAGCTTTAGTATTA
GCATGCCAATCTCATGCCTAATATTATTATACGCTATGGTGAATACCCAGTTGTGGAGCT
CAGTTCTTGATTGTATGATTACTTATGTAAATTCTATACAAAATTAAGTTCAATGAAACA
TTTATTTAACATATTGAAAAGTAGATAGCACCATATTTAGTTATTTTCTATCTTGTTTCA
AGTTTATTTTTATTGTATATTTTCAACATTAAATACTAAATTATTTTCATTTAGATGATT
CATTTCACTGAATTTAGTAATAGTCAATAAAAATTT

Aligned organism(s): 2 entry(ies)

More info

Aligned organism(s): 2 entry(ies)

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               490-996, gnl|bosTau2|chr10 (1629062-1628541)
               

               
               490-996, gnl|Hg17|chr5 (74930827-74931371)

Aligned organism(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               490-996, gnl|bosTau2|chr10 (1629062-1628541)
               

               
               490-996, gnl|Hg17|chr5 (74930827-74931371)

Expressed library(ies): 5 entry(ies)

More info

Expressed library(ies): 5 entry(ies)

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               eye (0.170503)
               

               
               ski (0.146735)
               

               
               ova (0.129132)
               

               
               ret (0.128733)
               

               
               spc (0.113366)

Expressed library(ies): 5 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eye (0.170503)
               

               
               ski (0.146735)
               

               
               ova (0.129132)
               

               
               ret (0.128733)
               

               
               spc (0.113366)

	490-996, gnl\|bosTau2\|chr10 (1629062-1628541)
	490-996, gnl\|Hg17\|chr5 (74930827-74931371)

	eye (0.170503)
	ski (0.146735)
	ova (0.129132)
	ret (0.128733)
	spc (0.113366)