Ss1.1-Pig3-SRG8027N07.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CTTGGCAGCATTCATCACAGTGATGCTTGCAAGGAGGCTTGTATGGGCCCTCATCTCAGA GGCCACTAAGGCGGGTGCAGCATCAATGATTCACTACATGGTTCTGATATCAGCTCGCTT GGTGCTACTTACTTTGTGTGGATGGGTACTTTGTTGGACCCTCGTCAATCTCTTTCGAAG CCATTCAGTCCTCAATCTCCTTTTCCTTGGCTACCCGTTTGGTGTTTATGTTCCTCTCTG CTGTTTCCACCAAGATAGTAGAGCTCATCTTCTTCTAACAGACTATAACTATGTGGTTCA GCACCAGGCGGTAGAGGAAAGTGCCTCGACTGTGGGTGGCTTGGCCAAATCCAAAGACTT CCTCTCCTTACTGCTGGAGTCTCTTAAAGAACAGTTTAATAATGCCACACCCATCCCCAC CCACAGCTGCCCCCTGTCTCCAGACCTCATTCGAAATGAAGTAGAATGTCTGAAAGCAGA TTTCAACCATAGAATCAAGGAAGTTCTCTTCAACTCCCTCTTCAGTGCCTACTATGTTGC ATTTCTCCCCCTGTGTTTTGTCAAGAGTACCCAGTACTATGACATGCGATGGTCATGTGA GCATCTCATTATGGTGTGGATCAATGCCTTTGTCATGCTCACCACACAACTGCTGCCATC CAAATACTGTGATTTGCTACATAAATCAGCTGCTCACCTGGGCAAGTGGCAGAAGCTTGA ACATGGGTCCTACAGCAACGCTCCACAGCATATTTGGTCAGAAAATACAATATGGCCTCA AGGGGTGCTGGTGCGACACAGCAGATGCTTATATAGAGCCATGGGGCCTTACAACGTGGC GGTGCCTTCAGACGTATCCCATGCTCGCTTTTATTTCCTGTTTCATCGTCCATTAAGGCT GTTAAATCTGCTTATCCTTATTGAAGGCAGTGTTGTCTTCTACCAACTCTATTCCTTGCT GCGGTCGGAGAAGTGGAACCACACACTTTCCATGGCTCTCATCCTCTTTTGCAACTACTA TGTTTTATTTAAGCTCCTCCGGGACAGAATAGTATTAGGCAGGGCATACTCCTATCCACT CAACAGTTACGAACTCAAGGCAAACTAAGCTGCCTCTCAACAATGAGGGAGAACTCAGAT AAAAATATTTTCATATGTTCTATTTTTTCTTGCGATTTTTATAAATATTTAAGATATTTT ATATTTTGTATACTATTATGTTTTGAAAGGTGGGAAGGGCAAGGGATATTAAATGTATCC ATAAACAAGGTGATGTGATCTTTCATGTGTTAGTATATTTGAATGATACACAGAGGAGAG GAGTGCCTCTCCAGTAAAGAGATTGATTTGTTTGTA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CTTGGCAGCATTCATCACAGTGATGCTTGCAAGGAGGCTTGTATGGGCCCTCATCTCAGA GGCCACTAAGGCGGGTGCAGCATCAATGATTCACTACATGGTTCTGATATCAGCTCGCTT GGTGCTACTTACTTTGTGTGGATGGGTACTTTGTTGGACCCTCGTCAATCTCTTTCGAAG CCATTCAGTCCTCAATCTCCTTTTCCTTGGCTACCCGTTTGGTGTTTATGTTCCTCTCTG CTGTTTCCACCAAGATAGTAGAGCTCATCTTCTTCTAACAGACTATAACTATGTGGTTCA GCACCAGGCGGTAGAGGAAAGTGCCTCGACTGTGGGTGGCTTGGCCAAATCCAAAGACTT CCTCTCCTTACTGCTGGAGTCTCTTAAAGAACAGTTTAATAATGCCACACCCATCCCCAC CCACAGCTGCCCCCTGTCTCCAGACCTCATTCGAAATGAAGTAGAATGTCTGAAAGCAGA TTTCAACCATAGAATCAAGGAAGTTCTCTTCAACTCCCTCTTCAGTGCCTACTATGTTGC ATTTCTCCCCCTGTGTTTTGTCAAGAGTACCCAGTACTATGACATGCGATGGTCATGTGA GCATCTCATTATGGTGTGGATCAATGCCTTTGTCATGCTCACCACACAACTGCTGCCATC CAAATACTGTGATTTGCTACATAAATCAGCTGCTCACCTGGGCAAGTGGCAGAAGCTTGA ACATGGGTCCTACAGCAACGCTCCACAGCATATTTGGTCAGAAAATACAATATGGCCTCA AGGGGTGCTGGTGCGACACAGCAGATGCTTATATAGAGCCATGGGGCCTTACAACGTGGC GGTGCCTTCAGACGTATCCCATGCTCGCTTTTATTTCCTGTTTCATCGTCCATTAAGGCT GTTAAATCTGCTTATCCTTATTGAAGGCAGTGTTGTCTTCTACCAACTCTATTCCTTGCT GCGGTCGGAGAAGTGGAACCACACACTTTCCATGGCTCTCATCCTCTTTTGCAACTACTA TGTTTTATTTAAGCTCCTCCGGGACAGAATAGTATTAGGCAGGGCATACTCCTATCCACT CAACAGTTACGAACTCAAGGCAAACTAAGCTGCCTCTCAACAATGAGGGAGAACTCAGAT AAAAATATTTTCATATGTTCTATTTTTTCTTGCGATTTTTATAAATATTTAAGATATTTT ATATTTTGTATACTATTATGTTTTGAAAGGTGGGAAGGGCAAGGGATATTAAATGTATCC ATAAACAAGGTGATGTGATCTTTCATGTGTTAGTATATTTGAATGATACACAGAGGAGAG GAGTGCCTCTCCAGTAAAGAGATTGATTTGTTTGTA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 211-449, - strand, RNAz p=0.627325 | |
| 1226-1356, - strand, RNAz p=0.979821 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 211-449, - strand, RNAz p=0.627325 | |
| 1226-1356, - strand, RNAz p=0.979821 |
| Aligned organism(s): 22 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
| 211-565, gnl|bosTau2|chr1 (41165356-41165002) | |
| 211-565, gnl|canFam2|chr33 (26132726-26133104) | |
| 211-565, gnl|danRer3|chr13 (34449332-34449733) | |
| 211-565, gnl|dasNov1|scaffold_6342 (16254-16631) | |
| 211-565, gnl|echTel1|scaffold_312353 (11838-12216) | |
| 211-565, gnl|fr1|chrUn (66155279-66155647) | |
| 211-565, gnl|galGal2|chr1 (74699386-74699771) | |
| 211-565, gnl|hg17|chr3 (120639285-120639659) | |
| 211-565, gnl|Hg17|chr3 (120639646-120639292) | |
| 211-565, gnl|loxAfr1|scaffold_9408 (6288-5910) | |
| 211-565, gnl|mm7|chr16 (38296484-38296112) | |
| 211-565, gnl|Mm7|chr16 (38296127-38296475) | |
| 211-565, gnl|monDom2|scaffold_24 (15997478-15997855) | |
| 211-565, gnl|oryCun1|scaffold_197009 (53654-54030) | |
| 211-565, gnl|panTro1|chr2 (122359184-122359558) | |
| 211-565, gnl|rheMac2|chr2 (39466836-39467210) | |
| 211-565, gnl|rn3|chr11 (64002066-64002438) | |
| 211-565, gnl|tetNig1|chr5 (9493458-9493836) | |
| 211-565, gnl|xenTro1|scaffold_159 (173404-173775) | |
| 868-1356, gnl|bosTau2|chr1 (41159645-41159156) | |
| 868-1356, gnl|Hg17|chr3 (120633758-120633269) | |
| 868-1356, gnl|Mm7|chr16 (38301862-38302345) |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 211-565, gnl|bosTau2|chr1 (41165356-41165002) | |
| 211-565, gnl|canFam2|chr33 (26132726-26133104) | |
| 211-565, gnl|danRer3|chr13 (34449332-34449733) | |
| 211-565, gnl|dasNov1|scaffold_6342 (16254-16631) | |
| 211-565, gnl|echTel1|scaffold_312353 (11838-12216) | |
| 211-565, gnl|fr1|chrUn (66155279-66155647) | |
| 211-565, gnl|galGal2|chr1 (74699386-74699771) | |
| 211-565, gnl|hg17|chr3 (120639285-120639659) | |
| 211-565, gnl|Hg17|chr3 (120639646-120639292) | |
| 211-565, gnl|loxAfr1|scaffold_9408 (6288-5910) | |
| 211-565, gnl|mm7|chr16 (38296484-38296112) | |
| 211-565, gnl|Mm7|chr16 (38296127-38296475) | |
| 211-565, gnl|monDom2|scaffold_24 (15997478-15997855) | |
| 211-565, gnl|oryCun1|scaffold_197009 (53654-54030) | |
| 211-565, gnl|panTro1|chr2 (122359184-122359558) | |
| 211-565, gnl|rheMac2|chr2 (39466836-39467210) | |
| 211-565, gnl|rn3|chr11 (64002066-64002438) | |
| 211-565, gnl|tetNig1|chr5 (9493458-9493836) | |
| 211-565, gnl|xenTro1|scaffold_159 (173404-173775) | |
| 868-1356, gnl|bosTau2|chr1 (41159645-41159156) | |
| 868-1356, gnl|Hg17|chr3 (120633758-120633269) | |
| 868-1356, gnl|Mm7|chr16 (38301862-38302345) |
| Expressed library(ies): 12 entry(ies) | More info |
| Expressed library(ies): 12 entry(ies) | Help | Less info |
| sag (0.36543) | |
| fat (0.294855) | |
| tes (0.207814) | |
| rec (0.17307) | |
| mcp (0.170648) | |
| fhi (0.169578) | |
| isp (0.150376) | |
| spl (0.143184) | |
| csk (0.140746) | |
| pla (0.133672) | |
| ova (0.129132) | |
| eje (0.0988338) |
| Expressed library(ies): 12 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| sag (0.36543) | |
| fat (0.294855) | |
| tes (0.207814) | |
| rec (0.17307) | |
| mcp (0.170648) | |
| fhi (0.169578) | |
| isp (0.150376) | |
| spl (0.143184) | |
| csk (0.140746) | |
| pla (0.133672) | |
| ova (0.129132) | |
| eje (0.0988338) |