Ss1.1-Pig3-SRG8028B11.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGACCAAGCTCTCTAGCTCCCTTTCACTGTCCTAAGAAAGGACAGAACACCAAGGAGAGA AAACTAGACTTAAGGAAAGAGTACCTTGCATTTTACATATCACAGAATACTGAGTTTGAT GTGTCCTTATTAATTCACTTAATTTGACACATGGTCTTGGGGGAAAAGTGCTCCTGTGCT AGACATGGCTGTTGAGAGTCCACATCCTGACCTGTAATGACATGCTCCCCTGGCCACTTC GCAGGTGTAAGTTTCAGTGAAGCACCTGGGAAGCTGTGTTCTGCAGGAAATGATGACTGC TTTAGTTGATTTTGGATGAGGGAGGAAAACTGGGAGAGTTGCTACTGGAAGAAATCTTCC TAGATCTGATGACTTTTATTAAACATCGAAAGTGAGGTGGTTTTGTACAGCAAAGGAAAC CATAAAAAAACCAAAAAGACAATCTAAGGAATGGAAGAAAAGTTTCAAATGACGCAACTG ACAAGGGCTTAACCTCTAAAATAT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGACCAAGCTCTCTAGCTCCCTTTCACTGTCCTAAGAAAGGACAGAACACCAAGGAGAGA AAACTAGACTTAAGGAAAGAGTACCTTGCATTTTACATATCACAGAATACTGAGTTTGAT GTGTCCTTATTAATTCACTTAATTTGACACATGGTCTTGGGGGAAAAGTGCTCCTGTGCT AGACATGGCTGTTGAGAGTCCACATCCTGACCTGTAATGACATGCTCCCCTGGCCACTTC GCAGGTGTAAGTTTCAGTGAAGCACCTGGGAAGCTGTGTTCTGCAGGAAATGATGACTGC TTTAGTTGATTTTGGATGAGGGAGGAAAACTGGGAGAGTTGCTACTGGAAGAAATCTTCC TAGATCTGATGACTTTTATTAAACATCGAAAGTGAGGTGGTTTTGTACAGCAAAGGAAAC CATAAAAAAACCAAAAAGACAATCTAAGGAATGGAAGAAAAGTTTCAAATGACGCAACTG ACAAGGGCTTAACCTCTAAAATAT |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 1-113, - strand, RNAz p=0.598886 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1-113, - strand, RNAz p=0.598886 |
| Aligned organism(s): 8 entry(ies) | More info |
| Aligned organism(s): 8 entry(ies) | Help | Less info |
| 1-384, gnl|bosTau2|chr5 (71266352-71266742) | |
| 1-384, gnl|canFam2|chr10 (26871121-26870778) | |
| 1-384, gnl|echTel1|scaffold_295022 (70139-69843) | |
| 1-384, gnl|hg17|chr22 (40182462-40182808) | |
| 1-384, gnl|loxAfr1|scaffold_68837 (7745-8047) | |
| 1-384, gnl|panTro1|chr23 (40449464-40449810) | |
| 1-384, gnl|rheMac2|chr10 (85419632-85419979) | |
| 401-503, gnl|bosTau2|chr10 (34666499-34666396) |
| Aligned organism(s): 8 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-384, gnl|bosTau2|chr5 (71266352-71266742) | |
| 1-384, gnl|canFam2|chr10 (26871121-26870778) | |
| 1-384, gnl|echTel1|scaffold_295022 (70139-69843) | |
| 1-384, gnl|hg17|chr22 (40182462-40182808) | |
| 1-384, gnl|loxAfr1|scaffold_68837 (7745-8047) | |
| 1-384, gnl|panTro1|chr23 (40449464-40449810) | |
| 1-384, gnl|rheMac2|chr10 (85419632-85419979) | |
| 401-503, gnl|bosTau2|chr10 (34666499-34666396) |
| Expressed library(ies): 3 entry(ies) | More info |
| Expressed library(ies): 3 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| sag (0.182715) | |
| sto (0.179824) | |
| thg (0.126791) |