Non-Coding RNA Search

Ss1.1-Pig3-SRG8028C08.3

Sequence:


               
               TGGGAAGGCAAGCTAAAAGCTTTAAACGTAAAATGCCCTTTTTATTTTGAATGGTTTCAG
AGTTGAACACTAGTAGAATATTTAACCTGCTGCTGACTTTTCTTAAACTGTGGCAACTAA
AGGCATCCTCATATACGTATTAATTAGTGAAATATTTGTCACTCTTACTGCACAGACTTG
TTTGCAGTTATAAACTGGTTAGGGTCATTTTGTTGTTTTTAATGAAACTAGTACCATCTG
TGCCCTCACAGGAAATTTCCAACACAGTTTTTAAGAACTAAACTAACCAGTCATGTTTAA
TCCGATAATCCACCCTGGAGGGGTGGGGGGCGGGGGGTGGTGGTGGTGGTTCCTTTTTGA
AACAAAAATGTCATTCAATTATTAACCAAATTACTTACTTTTGATTTCAAAAGCAGCTGT
GTTTTTGATGAGTACTGAACAAATGTGTGTAATTTTCTGTGCCAGACTTTTTTGACTTTG
TTTTCAAGCACTGTAATGTGGGATGGATGATTAGAAACAATAATATATTAGGGTTTCTAT
TTAACCCTTTCAGGACTGAACTGTATCTCCTTTTATTAATTTTTCCCTGTGTCGTGATAA
ATGTTTGCCAGCATTCAGTACTGTGTTGGTCCAGATGTAGGTTTATATGCTCATTTTTAG
CTTATTTCTTGTACCTTGCAGCATGCTCTACGCATTCAGTCCTTAAGGGGTTTATTTTAC
AAACTGTGCGCCTGTAAGGTTTATTAGCAATAAGATAGAAAATTGAGCAAGTTTATACCA
TAATTTTGTAGAAAAAAGAATCTGCTCAGTTCCATATTTCATCCATGAGAAACCTGCAAT
ACGAGCAGTTTCAAGAAATAAATAAAAAGGAAATGTAAACCATTGTAAAAGTCTTCTGTT
GGATGTGCCTGATGCATGTATTATCGTCTTTGATTTCAGAATACTTCATAAAGATGAAAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGGGAAGGCAAGCTAAAAGCTTTAAACGTAAAATGCCCTTTTTATTTTGAATGGTTTCAG
AGTTGAACACTAGTAGAATATTTAACCTGCTGCTGACTTTTCTTAAACTGTGGCAACTAA
AGGCATCCTCATATACGTATTAATTAGTGAAATATTTGTCACTCTTACTGCACAGACTTG
TTTGCAGTTATAAACTGGTTAGGGTCATTTTGTTGTTTTTAATGAAACTAGTACCATCTG
TGCCCTCACAGGAAATTTCCAACACAGTTTTTAAGAACTAAACTAACCAGTCATGTTTAA
TCCGATAATCCACCCTGGAGGGGTGGGGGGCGGGGGGTGGTGGTGGTGGTTCCTTTTTGA
AACAAAAATGTCATTCAATTATTAACCAAATTACTTACTTTTGATTTCAAAAGCAGCTGT
GTTTTTGATGAGTACTGAACAAATGTGTGTAATTTTCTGTGCCAGACTTTTTTGACTTTG
TTTTCAAGCACTGTAATGTGGGATGGATGATTAGAAACAATAATATATTAGGGTTTCTAT
TTAACCCTTTCAGGACTGAACTGTATCTCCTTTTATTAATTTTTCCCTGTGTCGTGATAA
ATGTTTGCCAGCATTCAGTACTGTGTTGGTCCAGATGTAGGTTTATATGCTCATTTTTAG
CTTATTTCTTGTACCTTGCAGCATGCTCTACGCATTCAGTCCTTAAGGGGTTTATTTTAC
AAACTGTGCGCCTGTAAGGTTTATTAGCAATAAGATAGAAAATTGAGCAAGTTTATACCA
TAATTTTGTAGAAAAAAGAATCTGCTCAGTTCCATATTTCATCCATGAGAAACCTGCAAT
ACGAGCAGTTTCAAGAAATAAATAAAAAGGAAATGTAAACCATTGTAAAAGTCTTCTGTT
GGATGTGCCTGATGCATGTATTATCGTCTTTGATTTCAGAATACTTCATAAAGATGAAAT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               751-869, + strand, RNAz p=0.513438

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               751-869, + strand, RNAz p=0.513438

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-946, gnl|bosTau2|chr6 (24171184-24172097)
               

               
               1-946, gnl|Hg17|chr4 (26111952-26112879)
               

               
               1-946, gnl|Mm7|chr5 (53029676-53030746)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-946, gnl|bosTau2|chr6 (24171184-24172097)
               

               
               1-946, gnl|Hg17|chr4 (26111952-26112879)
               

               
               1-946, gnl|Mm7|chr5 (53029676-53030746)

Expressed library(ies): 8 entry(ies)

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Expressed library(ies): 8 entry(ies)

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               pro (0.512033)
               

               
               nmm (0.398406)
               

               
               sme (0.305437)
               

               
               ece (0.229305)
               

               
               hea (0.204499)
               

               
               nco (0.161734)
               

               
               sug (0.127291)
               

               
               eje (0.0988338)

Expressed library(ies): 8 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pro (0.512033)
               

               
               nmm (0.398406)
               

               
               sme (0.305437)
               

               
               ece (0.229305)
               

               
               hea (0.204499)
               

               
               nco (0.161734)
               

               
               sug (0.127291)
               

               
               eje (0.0988338)

	1-946, gnl\|bosTau2\|chr6 (24171184-24172097)
	1-946, gnl\|Hg17\|chr4 (26111952-26112879)
	1-946, gnl\|Mm7\|chr5 (53029676-53030746)

	pro (0.512033)
	nmm (0.398406)
	sme (0.305437)
	ece (0.229305)
	hea (0.204499)
	nco (0.161734)
	sug (0.127291)
	eje (0.0988338)