Ss1.1-Pig3-SRG8028E16.3.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TTGTCAGGTTATGTGCCATTATCAAGGAGCAAGTACTGTCAGTTCATTGGAATGGAATAA TCTCATAAATAGCTTGAGATCTCCACTAGATTAGGGAGCATCATCACTGCCCTTCAGTAA TAAAGGATGTGCATGAATTGAATGAGACCCCACCTCAGGTCTTATTTCTTCAAATAAATT TTATGAGAGGACTTTATCCATGGGCCAAAGTAATGAATGAATTTTTTCTTGTCTGATGAA AAAGCTCTTATTTTCAGAGAGAAAGGTAAGATGCATATACTGCCACATACATGTAGTTTT AGCACCAGGATGTTTGTCTGGTTTCATTTTATAGATGCACAAAAAAGAGAAGTGCTTTTC TAGTCTAATGAATAGTTCCAAACAGACAAAATTAGACAATAGGAGAGTCAGAGCTTTGGC AAATTGTGGTTTATAAAAGCAGAGTACTCCAGAAAGCAAGGCCCCCCTGAGGTCTTCAGC CTCTTCTCAGACCAGCCCATTTGCCTCTGGTACACAGGTTGGCAGGCAGGAAGTGAATGT GATCCTGAGCGGAAAATGCTCTCTAGAAGATTCTCTTTTGCAGCAGATGTTTGTCGTTCG GTTTTTGGGATCAATGGCAGTTAAAACGGACAACACTCCTGAAGTGATTTATGAAGCAAT GAGACAAGTACTGGCTGCTCGGGCTATCCACAACATCTTCCGTACGACAGAATCCCACCT GATGGTCACCAGTCAGACTCTGAGGTTGATAGATCCTCAGACTCAAGTAACAAGGGCCAA TTTTGAACTTACCAGTGTCACTCAGTTTGCTGCTCATCAAGAAAATAAAAGGCTGGTTGG CTTTGTGGTGCGCATGCCTGAATCCACAGGCGGAGAGTCGCTGAGCACATATGTTTTTGA AAGCAACTCAGAAGGGGAAAAGATATGTTATGCTATTAATTTGGGAAAAGAAATCATTGA GGTACAGAAGGATCCAGAAGCATTTGGCTCAACTAAGCTGTCCATACCACTAACCAATGA TGGAAAATATGTACTGTTAAACGAATCAGCCAGATGACAGTGATGGAAGTTCAAGTGAAA ATAGAGGCGCAGAATCTGAAGCATAACTTTCTTGCTGTGCCTTTGGGGGAAGAGCACCCA GGAAGGAGAACTGCCTCCTTAAGGGTTTTCAACTTCTCTAACGCAGGCACACCACCTGGT TTCAGAATGCTGACAATCACTTGTGGAATGTACTCTTGATGCCTTGATACTGAAACTTGG GAGGGAAACAGTAAGCAATGGTTGACAACATACCCATCTGCAAATGTTATTTTAGGTGCT TTGTGGTAAGTCTTTTTCTTAGATTGCACTGTTCAGCGCTCAGAATGAAAGCTATGAAAA AAAGGCATTGTTCACTTTATTTCATCATCTCTTTTCAGTTTCCAGTATCCTTTTTTAAAA AATGGTAAAAGCCTAGATTTATAATTTGATAAACACTAAATATTTCCTATTAATATCTAT TTTTGTATTTTACTTAGCTTTAAGTGCCTGTCATTCTGAAAATTGTGTATTTATAATCAA GCTTGTCTTATAATTGGACCTAATAGCATTAACTTGTGTAGTTAAATGAAGGGCCCTGTT CTTTGAGGCTCAAGCACTAGCAGAAATGCAGGTCTAGTTTTGGTAATTGTTCAAACATCA AGCAATAAAAAGACAAGCAGATGAGTATCACAAAAGATGTTTAATTTTACATTGGAACCT TAATGAACCAGCATTCAGAAGGTTATGGTCCTTTAGATACTGCTTTTAGGGGTGGATCAC CATAGACAGGGTGCAGTTCTACCAATTCCTGTTTCTTCTGAGCCAGACCCTCCTTAAAGA AGGGGCCGATTCATTTTAAAACTCACTTGAAGCACAGCTGGCCATGGGGCTTGGAATAGA AGTTTCTATTTCTACCCTATGTCTCGTTCCAGGTGTCCCAGCCCACTAGGAAATAAGTAT AATGATCTTGAATTGGTACAGGGTGTTTTAATTATAACTAAGTTCAACAGAATATCATTG TCTTTGTAATAAATTAACCTAGCAATAAATGCTAGCAAATAAAAACTATCATTCTGCTTC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TTGTCAGGTTATGTGCCATTATCAAGGAGCAAGTACTGTCAGTTCATTGGAATGGAATAA TCTCATAAATAGCTTGAGATCTCCACTAGATTAGGGAGCATCATCACTGCCCTTCAGTAA TAAAGGATGTGCATGAATTGAATGAGACCCCACCTCAGGTCTTATTTCTTCAAATAAATT TTATGAGAGGACTTTATCCATGGGCCAAAGTAATGAATGAATTTTTTCTTGTCTGATGAA AAAGCTCTTATTTTCAGAGAGAAAGGTAAGATGCATATACTGCCACATACATGTAGTTTT AGCACCAGGATGTTTGTCTGGTTTCATTTTATAGATGCACAAAAAAGAGAAGTGCTTTTC TAGTCTAATGAATAGTTCCAAACAGACAAAATTAGACAATAGGAGAGTCAGAGCTTTGGC AAATTGTGGTTTATAAAAGCAGAGTACTCCAGAAAGCAAGGCCCCCCTGAGGTCTTCAGC CTCTTCTCAGACCAGCCCATTTGCCTCTGGTACACAGGTTGGCAGGCAGGAAGTGAATGT GATCCTGAGCGGAAAATGCTCTCTAGAAGATTCTCTTTTGCAGCAGATGTTTGTCGTTCG GTTTTTGGGATCAATGGCAGTTAAAACGGACAACACTCCTGAAGTGATTTATGAAGCAAT GAGACAAGTACTGGCTGCTCGGGCTATCCACAACATCTTCCGTACGACAGAATCCCACCT GATGGTCACCAGTCAGACTCTGAGGTTGATAGATCCTCAGACTCAAGTAACAAGGGCCAA TTTTGAACTTACCAGTGTCACTCAGTTTGCTGCTCATCAAGAAAATAAAAGGCTGGTTGG CTTTGTGGTGCGCATGCCTGAATCCACAGGCGGAGAGTCGCTGAGCACATATGTTTTTGA AAGCAACTCAGAAGGGGAAAAGATATGTTATGCTATTAATTTGGGAAAAGAAATCATTGA GGTACAGAAGGATCCAGAAGCATTTGGCTCAACTAAGCTGTCCATACCACTAACCAATGA TGGAAAATATGTACTGTTAAACGAATCAGCCAGATGACAGTGATGGAAGTTCAAGTGAAA ATAGAGGCGCAGAATCTGAAGCATAACTTTCTTGCTGTGCCTTTGGGGGAAGAGCACCCA GGAAGGAGAACTGCCTCCTTAAGGGTTTTCAACTTCTCTAACGCAGGCACACCACCTGGT TTCAGAATGCTGACAATCACTTGTGGAATGTACTCTTGATGCCTTGATACTGAAACTTGG GAGGGAAACAGTAAGCAATGGTTGACAACATACCCATCTGCAAATGTTATTTTAGGTGCT TTGTGGTAAGTCTTTTTCTTAGATTGCACTGTTCAGCGCTCAGAATGAAAGCTATGAAAA AAAGGCATTGTTCACTTTATTTCATCATCTCTTTTCAGTTTCCAGTATCCTTTTTTAAAA AATGGTAAAAGCCTAGATTTATAATTTGATAAACACTAAATATTTCCTATTAATATCTAT TTTTGTATTTTACTTAGCTTTAAGTGCCTGTCATTCTGAAAATTGTGTATTTATAATCAA GCTTGTCTTATAATTGGACCTAATAGCATTAACTTGTGTAGTTAAATGAAGGGCCCTGTT CTTTGAGGCTCAAGCACTAGCAGAAATGCAGGTCTAGTTTTGGTAATTGTTCAAACATCA AGCAATAAAAAGACAAGCAGATGAGTATCACAAAAGATGTTTAATTTTACATTGGAACCT TAATGAACCAGCATTCAGAAGGTTATGGTCCTTTAGATACTGCTTTTAGGGGTGGATCAC CATAGACAGGGTGCAGTTCTACCAATTCCTGTTTCTTCTGAGCCAGACCCTCCTTAAAGA AGGGGCCGATTCATTTTAAAACTCACTTGAAGCACAGCTGGCCATGGGGCTTGGAATAGA AGTTTCTATTTCTACCCTATGTCTCGTTCCAGGTGTCCCAGCCCACTAGGAAATAAGTAT AATGATCTTGAATTGGTACAGGGTGTTTTAATTATAACTAAGTTCAACAGAATATCATTG TCTTTGTAATAAATTAACCTAGCAATAAATGCTAGCAAATAAAAACTATCATTCTGCTTC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 25 entry(ies) | More info |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
| 557-771, gnl|bosTau2|chr22 (33169201-33169416) | |
| 557-771, gnl|canFam2|chr20 (36135170-36134967) | |
| 557-771, gnl|danRer3|chr19 (65049230-65049041) | |
| 557-771, gnl|dasNov1|scaffold_56008 (9582-9784) | |
| 557-771, gnl|echTel1|scaffold_317294 (30181-30382) | |
| 557-771, gnl|fr1|chrUn (263486247-263486446) | |
| 557-771, gnl|galGal2|chr12 (8690526-8690724) | |
| 557-771, gnl|hg17|chr3 (57268897-57269098) | |
| 557-771, gnl|Hg17|chr3 (57268900-57269113) | |
| 557-771, gnl|loxAfr1|scaffold_54581 (11144-10950) | |
| 557-771, gnl|mm7|chr14 (24361518-24361316) | |
| 557-771, gnl|Mm7|chr14 (24361513-24361299) | |
| 557-771, gnl|monDom2|scaffold_5 (2270562-2270762) | |
| 557-771, gnl|oryCun1|scaffold_137000 (2282-2456) | |
| 557-771, gnl|panTro1|chr2 (58936494-58936695) | |
| 557-771, gnl|rheMac2|chr2 (79113405-79113204) | |
| 557-771, gnl|rn3|chr16 (2187836-2187634) | |
| 557-771, gnl|tetNig1|chrUn_random (5508421-5508238) | |
| 557-771, gnl|xenTro1|scaffold_80 (2502857-2502664) | |
| 782-940, gnl|bosTau2|chr2 (80742894-80742735) | |
| 782-940, gnl|Hg17|chr12 (104073261-104073108) | |
| 782-940, gnl|Mm7|chr10 (83144407-83144265) | |
| 969-2093, gnl|bosTau2|chr2 (80740657-80739523) | |
| 969-2093, gnl|Hg17|chr12 (104070695-104069550) | |
| 969-2093, gnl|Mm7|chr10 (83142552-83141555) |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 557-771, gnl|bosTau2|chr22 (33169201-33169416) | |
| 557-771, gnl|canFam2|chr20 (36135170-36134967) | |
| 557-771, gnl|danRer3|chr19 (65049230-65049041) | |
| 557-771, gnl|dasNov1|scaffold_56008 (9582-9784) | |
| 557-771, gnl|echTel1|scaffold_317294 (30181-30382) | |
| 557-771, gnl|fr1|chrUn (263486247-263486446) | |
| 557-771, gnl|galGal2|chr12 (8690526-8690724) | |
| 557-771, gnl|hg17|chr3 (57268897-57269098) | |
| 557-771, gnl|Hg17|chr3 (57268900-57269113) | |
| 557-771, gnl|loxAfr1|scaffold_54581 (11144-10950) | |
| 557-771, gnl|mm7|chr14 (24361518-24361316) | |
| 557-771, gnl|Mm7|chr14 (24361513-24361299) | |
| 557-771, gnl|monDom2|scaffold_5 (2270562-2270762) | |
| 557-771, gnl|oryCun1|scaffold_137000 (2282-2456) | |
| 557-771, gnl|panTro1|chr2 (58936494-58936695) | |
| 557-771, gnl|rheMac2|chr2 (79113405-79113204) | |
| 557-771, gnl|rn3|chr16 (2187836-2187634) | |
| 557-771, gnl|tetNig1|chrUn_random (5508421-5508238) | |
| 557-771, gnl|xenTro1|scaffold_80 (2502857-2502664) | |
| 782-940, gnl|bosTau2|chr2 (80742894-80742735) | |
| 782-940, gnl|Hg17|chr12 (104073261-104073108) | |
| 782-940, gnl|Mm7|chr10 (83144407-83144265) | |
| 969-2093, gnl|bosTau2|chr2 (80740657-80739523) | |
| 969-2093, gnl|Hg17|chr12 (104070695-104069550) | |
| 969-2093, gnl|Mm7|chr10 (83142552-83141555) |
| Expressed library(ies): 25 entry(ies) | More info |
| Expressed library(ies): 25 entry(ies) | Help | Less info |
| tra (1.10783) | |
| pro (1.02407) | |
| liv (0.877706) | |
| lin (0.582411) | |
| cmu (0.55918) | |
| cbe (0.478469) | |
| fco (0.471624) | |
| ret (0.257467) | |
| pan (0.23596) | |
| mgp (0.230681) | |
| eje (0.197668) | |
| aor (0.195274) | |
| mgm (0.180343) | |
| sto (0.179824) | |
| gul (0.177588) | |
| rec (0.17307) | |
| tbr (0.154178) | |
| fat (0.147427) | |
| spl (0.143184) | |
| lyg (0.133103) | |
| sug (0.127291) | |
| thg (0.126791) | |
| clu (0.119646) | |
| pgl (0.118483) | |
| jej (0.0989218) |
| Expressed library(ies): 25 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| tra (1.10783) | |
| pro (1.02407) | |
| liv (0.877706) | |
| lin (0.582411) | |
| cmu (0.55918) | |
| cbe (0.478469) | |
| fco (0.471624) | |
| ret (0.257467) | |
| pan (0.23596) | |
| mgp (0.230681) | |
| eje (0.197668) | |
| aor (0.195274) | |
| mgm (0.180343) | |
| sto (0.179824) | |
| gul (0.177588) | |
| rec (0.17307) | |
| tbr (0.154178) | |
| fat (0.147427) | |
| spl (0.143184) | |
| lyg (0.133103) | |
| sug (0.127291) | |
| thg (0.126791) | |
| clu (0.119646) | |
| pgl (0.118483) | |
| jej (0.0989218) |