Non-Coding RNA Search

Ss1.1-Pig3-SRG8028F15.3

Sequence:


               
               TTTTGAGTGAGCTTAAAGAAGTGGAGCCAAAATTAGCCGCCTGGATCCAGAAGCTTAATA
GCTTTGGCTTAGATGCCACTGGACCTTTTTTTTCTCGTTATGGGGCCTCTCTGAAGGAGC
TTGATTTCAGCATCATGACTTTTCTCTGGAATGAGAAATATGGTCATAAGCTAGGTTCTA
TAGAAGGAAAGAAGCTTGATTATTTCTATGAGCCAACGTCCTTGAAGGAAGCCCGATGTT
TAATATGGCTGCTGGAAGAGCACAGAGACAAGTTCCCAGCACTGCACAATGCCTTGGACG
AATTCTTTGATATAATGGACAGCCGCTGCACTGTGTTAAGGAAACAGGACAGCGGTGACG
TGCCATTTAATTCTACCAAGATAAAAAACAAAGGCAAGAAAAAGAAGCCTAAAGATTCAA
AGCCTATGTTAGTTGGGTCTGGAACAAGCTCAGTAACACCAAATAATGAGACCATCACTT
CAGGTGAAGATATCAAACGCAATTCAAATTCTGCAGGCCCATTTGTAGTGCCTGACCACC
TTCGCCAAGATGTGGAAGAGTTCGAAGCTCTGTATGAACAGCACAGTAATGAATATGTTG
TCCGGAATAAGAAGCTGTGGGACATTAACCCAAAACAGAAGTGTTCAACTCTTTATGATT
ATTTCTCCCAGTTGTTGGAGGAACATGGCCCCTTGGACATGAGTAACAAGATGTTTTCCG
AAGAATATGAATTCTTCCCAGAAGAGACTCGACAGATACTAGAAAAAGCAGGAGGTTTGA
AATCTTTTCTCCTGGGATGTCCTCGTTTTGTTGTGATTGACAACTGTATTGCACTGAAGA
AAGTTGCATTACGGCTCAAGAAAAAGAGAAAGAAGAAAAACATTAAGACAAAAGTCGAAG
AAATTTCAAAAACAGGAGAGTACTTACGAGTTAAACTACCGCTGAATCCAGCTGCTAGGG
AATTTAAACCAGATGTAAAATCCAAACCCGTATCTGATTTATCTTCAGCACCAGCTTCTG
AGGATCTGAAGCCCCAACCTACTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTGAGTGAGCTTAAAGAAGTGGAGCCAAAATTAGCCGCCTGGATCCAGAAGCTTAATA
GCTTTGGCTTAGATGCCACTGGACCTTTTTTTTCTCGTTATGGGGCCTCTCTGAAGGAGC
TTGATTTCAGCATCATGACTTTTCTCTGGAATGAGAAATATGGTCATAAGCTAGGTTCTA
TAGAAGGAAAGAAGCTTGATTATTTCTATGAGCCAACGTCCTTGAAGGAAGCCCGATGTT
TAATATGGCTGCTGGAAGAGCACAGAGACAAGTTCCCAGCACTGCACAATGCCTTGGACG
AATTCTTTGATATAATGGACAGCCGCTGCACTGTGTTAAGGAAACAGGACAGCGGTGACG
TGCCATTTAATTCTACCAAGATAAAAAACAAAGGCAAGAAAAAGAAGCCTAAAGATTCAA
AGCCTATGTTAGTTGGGTCTGGAACAAGCTCAGTAACACCAAATAATGAGACCATCACTT
CAGGTGAAGATATCAAACGCAATTCAAATTCTGCAGGCCCATTTGTAGTGCCTGACCACC
TTCGCCAAGATGTGGAAGAGTTCGAAGCTCTGTATGAACAGCACAGTAATGAATATGTTG
TCCGGAATAAGAAGCTGTGGGACATTAACCCAAAACAGAAGTGTTCAACTCTTTATGATT
ATTTCTCCCAGTTGTTGGAGGAACATGGCCCCTTGGACATGAGTAACAAGATGTTTTCCG
AAGAATATGAATTCTTCCCAGAAGAGACTCGACAGATACTAGAAAAAGCAGGAGGTTTGA
AATCTTTTCTCCTGGGATGTCCTCGTTTTGTTGTGATTGACAACTGTATTGCACTGAAGA
AAGTTGCATTACGGCTCAAGAAAAAGAGAAAGAAGAAAAACATTAAGACAAAAGTCGAAG
AAATTTCAAAAACAGGAGAGTACTTACGAGTTAAACTACCGCTGAATCCAGCTGCTAGGG
AATTTAAACCAGATGTAAAATCCAAACCCGTATCTGATTTATCTTCAGCACCAGCTTCTG
AGGATCTGAAGCCCCAACCTACTT

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               105-224, + strand, RNAz p=0.526061
               

               
               534-653, + strand, RNAz p=0.694409

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               105-224, + strand, RNAz p=0.526061
               

               
               534-653, + strand, RNAz p=0.694409

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               66-318, gnl|bosTau2|chr1 (99475218-99475470)
               

               
               66-318, gnl|Hg17|chr21 (37450826-37451078)
               

               
               66-318, gnl|Mm7|chr16 (94721133-94721385)
               


               
               403-661, gnl|bosTau2|chr1 (91791667-91791422)
               

               
               403-661, gnl|Mm7|chr16 (94727759-94731573)

Aligned organism(s): 5 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               66-318, gnl|bosTau2|chr1 (99475218-99475470)
               

               
               66-318, gnl|Hg17|chr21 (37450826-37451078)
               

               
               66-318, gnl|Mm7|chr16 (94721133-94721385)
               


               
               403-661, gnl|bosTau2|chr1 (91791667-91791422)
               

               
               403-661, gnl|Mm7|chr16 (94727759-94731573)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               sag (0.182715)
               

               
               nco (0.161734)
               

               
               thg (0.126791)
               

               
               ebs (0.118301)
               

               
               eje (0.0988338)

Expressed library(ies): 5 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sag (0.182715)
               

               
               nco (0.161734)
               

               
               thg (0.126791)
               

               
               ebs (0.118301)
               

               
               eje (0.0988338)

	105-224, + strand, RNAz p=0.526061
	534-653, + strand, RNAz p=0.694409

	66-318, gnl\|bosTau2\|chr1 (99475218-99475470)
	66-318, gnl\|Hg17\|chr21 (37450826-37451078)
	66-318, gnl\|Mm7\|chr16 (94721133-94721385)

	403-661, gnl\|bosTau2\|chr1 (91791667-91791422)
	403-661, gnl\|Mm7\|chr16 (94727759-94731573)

	sag (0.182715)
	nco (0.161734)
	thg (0.126791)
	ebs (0.118301)
	eje (0.0988338)