Ss1.1-Pig3-SRG8028G01.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CCGCGGCGAGCGAGCGTGGGTGAGAGAGCTGAGGATGTGAGCAGGGCTGCAGCGGGCAGG TCCAAGGTTGAAGATGGTGGATACACTGGCTCAGAAAATGTGAGGTTGTGTCTCAGCAAT GGAGCGATGAGTGTCTATTGAGTTAAGAAGGAGAAAGTAACAAATTCCGGAGAGGTGCAG CATCAGTTAGATAAAACAAAGCAACAGCATCAAGAACAACAAGCTCTTCAGCAAAGCACT ACGGCGAAACTTTGAGAAGCTCAGAATGATTGGGAAAAAGTGCTTCGTCAATTTGGTGAG AAGGACCAAAAGATCCAGAACCTTGAAGCCTTATTACAGGAGAGTAAAGAAAATATTTCT TTCCTAGAAAAGGAAAGAGAAGATTTTATGCAAAAACTCAGGCTGGTGAAGGAGAGACCG CTGTTCTTAATCAGTTGCAGGAAGAAAACCATATATTACAGGAACAAGTAACTCAACTAA AGGCCCAGGAGAATTTGCATGACCAGGTGCAAGAGCAGAAGGCACTTCTTAGAGCTGCAC AAGACTGTCCTCTCCCTAGAAGCCAGCATCAATGAATTAAATAATCAATTAAATGAAAGA AAGGAGAAGGTCTCCCAGCTTGACATACAGATTAAAGCCAAAACTGAATTAGTACTATCA GCAGAAGCAGCAAAAACTGCTCAAAGAGCAGATCTTCAAAATCATTTGGACACAGCTCAA AGTGCATTACAAGATAAACAGCAGCATATCCAGGTACAAAGTTGGGGTCTACAGAAGAAA TCTGAAGCAACTTGAAAATATTAAAGCAAGGTGCTTACCAAAGCAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CCGCGGCGAGCGAGCGTGGGTGAGAGAGCTGAGGATGTGAGCAGGGCTGCAGCGGGCAGG TCCAAGGTTGAAGATGGTGGATACACTGGCTCAGAAAATGTGAGGTTGTGTCTCAGCAAT GGAGCGATGAGTGTCTATTGAGTTAAGAAGGAGAAAGTAACAAATTCCGGAGAGGTGCAG CATCAGTTAGATAAAACAAAGCAACAGCATCAAGAACAACAAGCTCTTCAGCAAAGCACT ACGGCGAAACTTTGAGAAGCTCAGAATGATTGGGAAAAAGTGCTTCGTCAATTTGGTGAG AAGGACCAAAAGATCCAGAACCTTGAAGCCTTATTACAGGAGAGTAAAGAAAATATTTCT TTCCTAGAAAAGGAAAGAGAAGATTTTATGCAAAAACTCAGGCTGGTGAAGGAGAGACCG CTGTTCTTAATCAGTTGCAGGAAGAAAACCATATATTACAGGAACAAGTAACTCAACTAA AGGCCCAGGAGAATTTGCATGACCAGGTGCAAGAGCAGAAGGCACTTCTTAGAGCTGCAC AAGACTGTCCTCTCCCTAGAAGCCAGCATCAATGAATTAAATAATCAATTAAATGAAAGA AAGGAGAAGGTCTCCCAGCTTGACATACAGATTAAAGCCAAAACTGAATTAGTACTATCA GCAGAAGCAGCAAAAACTGCTCAAAGAGCAGATCTTCAAAATCATTTGGACACAGCTCAA AGTGCATTACAAGATAAACAGCAGCATATCCAGGTACAAAGTTGGGGTCTACAGAAGAAA TCTGAAGCAACTTGAAAATATTAAAGCAAGGTGCTTACCAAAGCAAAA |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 262-459, + strand, RNAz p=0.916179 | |
| 271-389, - strand, RNAz p=0.81042 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 262-459, + strand, RNAz p=0.916179 | |
| 271-389, - strand, RNAz p=0.81042 |
| Aligned organism(s): 35 entry(ies) | More info |
| Aligned organism(s): 35 entry(ies) | Help | Less info |
| 262-471, gnl|bosTau2|chr16 (34439727-34439937) | |
| 262-471, gnl|canFam2|chr15 (36199506-36199741) | |
| 262-471, gnl|danRer3|chr18 (10713645-10713886) | |
| 262-471, gnl|dasNov1|scaffold_18593 (51104-50868) | |
| 262-471, gnl|echTel1|scaffold_231292 (626-391) | |
| 262-471, gnl|fr1|chrUn (113399838-113400051) | |
| 262-471, gnl|galGal2|chr1 (41456775-41457037) | |
| 262-471, gnl|hg17|chr12 (91715525-91715761) | |
| 262-471, gnl|Hg17|chr12 (91715758-91715548) | |
| 262-471, gnl|mm7|chr10 (95580722-95580490) | |
| 262-471, gnl|Mm7|chr10 (95580490-95580700) | |
| 262-471, gnl|monDom2|scaffold_34 (23568339-23568104) | |
| 262-471, gnl|oryCun1|scaffold_167973 (17524-17288) | |
| 262-471, gnl|panTro1|chr10 (93889190-93889426) | |
| 262-471, gnl|rheMac2|chr11 (94022277-94022513) | |
| 262-471, gnl|rn3|chr7 (33376349-33376115) | |
| 262-471, gnl|tetNig1|chr13 (4716036-4715818) | |
| 262-471, gnl|xenTro1|scaffold_109 (1473781-1474014) | |
| 483-630, gnl|bosTau2|chr16 (34442683-34442832) | |
| 483-630, gnl|canFam2|chr15 (36196843-36196984) | |
| 483-630, gnl|danRer3|chr18 (10713381-10713533) | |
| 483-630, gnl|echTel1|scaffold_231292 (2965-2824) | |
| 483-630, gnl|fr1|chrUn (113399538-113399685) | |
| 483-630, gnl|galGal2|chr1 (41455581-41455720) | |
| 483-630, gnl|hg17|chr12 (91712437-91712578) | |
| 483-630, gnl|Hg17|chr12 (91712593-91712444) | |
| 483-630, gnl|loxAfr1|scaffold_22147 (41543-41400) | |
| 483-630, gnl|mm7|chr10 (95582527-95582386) | |
| 483-630, gnl|Mm7|chr10 (95582369-95582518) | |
| 483-630, gnl|monDom2|scaffold_34 (23571652-23571511) | |
| 483-630, gnl|panTro1|chr10 (93886105-93886246) | |
| 483-630, gnl|rheMac2|chr11 (94019331-94019472) | |
| 483-630, gnl|rn3|chr7 (33379650-33379509) | |
| 483-630, gnl|tetNig1|chr13 (4716316-4716179) | |
| 483-630, gnl|xenTro1|scaffold_109 (1472998-1473138) |
| Aligned organism(s): 35 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 262-471, gnl|bosTau2|chr16 (34439727-34439937) | |
| 262-471, gnl|canFam2|chr15 (36199506-36199741) | |
| 262-471, gnl|danRer3|chr18 (10713645-10713886) | |
| 262-471, gnl|dasNov1|scaffold_18593 (51104-50868) | |
| 262-471, gnl|echTel1|scaffold_231292 (626-391) | |
| 262-471, gnl|fr1|chrUn (113399838-113400051) | |
| 262-471, gnl|galGal2|chr1 (41456775-41457037) | |
| 262-471, gnl|hg17|chr12 (91715525-91715761) | |
| 262-471, gnl|Hg17|chr12 (91715758-91715548) | |
| 262-471, gnl|mm7|chr10 (95580722-95580490) | |
| 262-471, gnl|Mm7|chr10 (95580490-95580700) | |
| 262-471, gnl|monDom2|scaffold_34 (23568339-23568104) | |
| 262-471, gnl|oryCun1|scaffold_167973 (17524-17288) | |
| 262-471, gnl|panTro1|chr10 (93889190-93889426) | |
| 262-471, gnl|rheMac2|chr11 (94022277-94022513) | |
| 262-471, gnl|rn3|chr7 (33376349-33376115) | |
| 262-471, gnl|tetNig1|chr13 (4716036-4715818) | |
| 262-471, gnl|xenTro1|scaffold_109 (1473781-1474014) | |
| 483-630, gnl|bosTau2|chr16 (34442683-34442832) | |
| 483-630, gnl|canFam2|chr15 (36196843-36196984) | |
| 483-630, gnl|danRer3|chr18 (10713381-10713533) | |
| 483-630, gnl|echTel1|scaffold_231292 (2965-2824) | |
| 483-630, gnl|fr1|chrUn (113399538-113399685) | |
| 483-630, gnl|galGal2|chr1 (41455581-41455720) | |
| 483-630, gnl|hg17|chr12 (91712437-91712578) | |
| 483-630, gnl|Hg17|chr12 (91712593-91712444) | |
| 483-630, gnl|loxAfr1|scaffold_22147 (41543-41400) | |
| 483-630, gnl|mm7|chr10 (95582527-95582386) | |
| 483-630, gnl|Mm7|chr10 (95582369-95582518) | |
| 483-630, gnl|monDom2|scaffold_34 (23571652-23571511) | |
| 483-630, gnl|panTro1|chr10 (93886105-93886246) | |
| 483-630, gnl|rheMac2|chr11 (94019331-94019472) | |
| 483-630, gnl|rn3|chr7 (33379650-33379509) | |
| 483-630, gnl|tetNig1|chr13 (4716316-4716179) | |
| 483-630, gnl|xenTro1|scaffold_109 (1472998-1473138) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| tes (0.207814) |