Non-Coding RNA Search

Ss1.1-Pig3-SRG8028H21.3

Sequence:


               
               CCCCAAGCCTGCCGGTTTGCAGAGCTTCCGCGGGAGCCGGGTGCTCGGGTGTGGCGGTGA
CGGGCGGGGAGGAGGAAATCGAACCTTTTCTAGTGAGTCCTATTATAGTTAACAGTCGGT
TGCACACTTTTTTTAAAAAAAAGTAAACGAATTTGCCACGATTAAATGTCATAACATTTA
TGACAGGATATAAAATATTAACATATTTTAAGCCAAGTTTTAGGTGTATTTTTTGAATCT
TGGTTATAAACCCAATTTTAAAGGGCGTTGTATCCAGCGTTGTGAAGGCAACTGTACCCA
TATTTATATTTTTATAAAATACCTATAAGACTGTGAATCTCTTGTGCTAATTGCCGAGTA
AGTTGGGCCGCTTTGCCCCTCTTCAGCCTCCTGGAGCTTCAAGGACCCGATTCGAATCCA
AAAATCCTGCCACGGGGGAGGGGCCGCCGGGAGGGGCCGCGCGAGGACCTGGGACGGAGG
CGGGGCTTCTGCGTCACGTTCTGTCCCGAAAGGCGCCCTTCCTGGTCTCCGAGGTTCCAA
TTTTCTATGCAACCCCACACCCCTTGTTGTTTTGATCCTGAGAAATAAAAGGGAGGCTGA
ATTATTCAAATTTAAATGAGGCTTCCCCAGGGTAGAAGTGCTGCTGACCCTTCGTGCAAA
AATGGGGAGCACTTGAGGACACAGGTGGGTGGAGGCCCTTTGTGCGTGGCTGGTCAGATT
TGGGCCGTCATCTGTGGCTTTTTATAAAACCTTGTGTGAGAAGAATATATTGATAATGTC
AGTGAAACAAGCAGACATTGAAACTGAGGCACAGATTACTCCAAAAGGAGTTTTTCTGTA
TATTTTTTCTAGATGCAAATACCTTTTTAATTATGTTAATTAACGTTAAGACTTCCTAGG
CTTACGTGGAAGCCGTGCATGGGTCCTGGTGTGATCACGTCTAACTGGATGAAGGCTGCA
GCACGTCCTGAGTGTACGATAGAGACTTGTAGCCCAGCGTGAAAAATTTATAAATAAATT
TTTCATTGATCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCCCAAGCCTGCCGGTTTGCAGAGCTTCCGCGGGAGCCGGGTGCTCGGGTGTGGCGGTGA
CGGGCGGGGAGGAGGAAATCGAACCTTTTCTAGTGAGTCCTATTATAGTTAACAGTCGGT
TGCACACTTTTTTTAAAAAAAAGTAAACGAATTTGCCACGATTAAATGTCATAACATTTA
TGACAGGATATAAAATATTAACATATTTTAAGCCAAGTTTTAGGTGTATTTTTTGAATCT
TGGTTATAAACCCAATTTTAAAGGGCGTTGTATCCAGCGTTGTGAAGGCAACTGTACCCA
TATTTATATTTTTATAAAATACCTATAAGACTGTGAATCTCTTGTGCTAATTGCCGAGTA
AGTTGGGCCGCTTTGCCCCTCTTCAGCCTCCTGGAGCTTCAAGGACCCGATTCGAATCCA
AAAATCCTGCCACGGGGGAGGGGCCGCCGGGAGGGGCCGCGCGAGGACCTGGGACGGAGG
CGGGGCTTCTGCGTCACGTTCTGTCCCGAAAGGCGCCCTTCCTGGTCTCCGAGGTTCCAA
TTTTCTATGCAACCCCACACCCCTTGTTGTTTTGATCCTGAGAAATAAAAGGGAGGCTGA
ATTATTCAAATTTAAATGAGGCTTCCCCAGGGTAGAAGTGCTGCTGACCCTTCGTGCAAA
AATGGGGAGCACTTGAGGACACAGGTGGGTGGAGGCCCTTTGTGCGTGGCTGGTCAGATT
TGGGCCGTCATCTGTGGCTTTTTATAAAACCTTGTGTGAGAAGAATATATTGATAATGTC
AGTGAAACAAGCAGACATTGAAACTGAGGCACAGATTACTCCAAAAGGAGTTTTTCTGTA
TATTTTTTCTAGATGCAAATACCTTTTTAATTATGTTAATTAACGTTAAGACTTCCTAGG
CTTACGTGGAAGCCGTGCATGGGTCCTGGTGTGATCACGTCTAACTGGATGAAGGCTGCA
GCACGTCCTGAGTGTACGATAGAGACTTGTAGCCCAGCGTGAAAAATTTATAAATAAATT
TTTCATTGATCT

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               150-268, - strand, RNAz p=0.843586
               

               
               731-850, - strand, RNAz p=0.888955
               

               
               917-1032, + strand, RNAz p=0.765215

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               150-268, - strand, RNAz p=0.843586
               

               
               731-850, - strand, RNAz p=0.888955
               

               
               917-1032, + strand, RNAz p=0.765215

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_001004354, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_001004354, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               3-1032, gnl|bosTau2|chr11 (85377231-85378236)
               

               
               3-1032, gnl|Hg17|chr9 (137470981-137469948)
               

               
               3-1032, gnl|Mm7|chr2 (25189605-25190632)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-1032, gnl|bosTau2|chr11 (85377231-85378236)
               

               
               3-1032, gnl|Hg17|chr9 (137470981-137469948)
               

               
               3-1032, gnl|Mm7|chr2 (25189605-25190632)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               ece (0.229305)
               

               
               fhi (0.169578)
               

               
               nje (0.16592)
               

               
               cty (0.10408)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ece (0.229305)
               

               
               fhi (0.169578)
               

               
               nje (0.16592)
               

               
               cty (0.10408)

	150-268, - strand, RNAz p=0.843586
	731-850, - strand, RNAz p=0.888955
	917-1032, + strand, RNAz p=0.765215

	3-1032, gnl\|bosTau2\|chr11 (85377231-85378236)
	3-1032, gnl\|Hg17\|chr9 (137470981-137469948)
	3-1032, gnl\|Mm7\|chr2 (25189605-25190632)