Non-Coding RNA Search

Ss1.1-Pig3-SRG8028I01.3

Sequence:


               
               ATGTTACCTTACAGAGGCAGCTTGGGAACAGGCATGGGACATGTGGCCCTCTCTTCTGAA
GCAGATCCGTGCCAGGATACATGGCCCTTTTCTTGTCTTGATGCCCGACTGTGCTGGACT
GACTGCTGTGTAGAGCGGTTTGGTCTGAAGGTCATCGGGAATCTGCTTGCTCCGTGTCCT
GTGTCCTCCATGACAGGCTGGGATGACTCTGCAAGAAAAGAAGAAGGTTGGCGGACCCAG
GGGTTGCTGTCTGGTCTATGGAGAGGAGTTGGCTGGCACGGAGACACAGAGCAAGATGCT
GGGTACAAGGCAACTGGCTTGATAACTGCACGTCATCGTTCATCGTTCTCTTCCTTAGAC
AAATAGACCCGAAAGCGGGTTCTTGAAGTAGAAGTCTGGTCAAAATCATGAGATTCAGAG
AATCTAAGGATCGGGTGCCAGTAGCCATGATTCTTTGAAACTGAATAAAGGTGAGGAGAT
TCCACCTTAAGAGACAGCTCAAAGCAGTAGCTTTTTCCCCACGTCGGGAGAGAGGATGGA
GGAGGAAATCCACCAGGCTCATTTCACCCCGATTCCCTTTTTGCTCACGGATGTTTGCCT
TGTAAGGATTAATCAACTTACTAGGGTGGGAAGTCCATGAAAGCCAAGGTGAAGGCATAG
TCCTTTAGCTCTATGGGTGTTCGAAGTACATTTATATCCAAATGTTAATAAACATAAATG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATGTTACCTTACAGAGGCAGCTTGGGAACAGGCATGGGACATGTGGCCCTCTCTTCTGAA
GCAGATCCGTGCCAGGATACATGGCCCTTTTCTTGTCTTGATGCCCGACTGTGCTGGACT
GACTGCTGTGTAGAGCGGTTTGGTCTGAAGGTCATCGGGAATCTGCTTGCTCCGTGTCCT
GTGTCCTCCATGACAGGCTGGGATGACTCTGCAAGAAAAGAAGAAGGTTGGCGGACCCAG
GGGTTGCTGTCTGGTCTATGGAGAGGAGTTGGCTGGCACGGAGACACAGAGCAAGATGCT
GGGTACAAGGCAACTGGCTTGATAACTGCACGTCATCGTTCATCGTTCTCTTCCTTAGAC
AAATAGACCCGAAAGCGGGTTCTTGAAGTAGAAGTCTGGTCAAAATCATGAGATTCAGAG
AATCTAAGGATCGGGTGCCAGTAGCCATGATTCTTTGAAACTGAATAAAGGTGAGGAGAT
TCCACCTTAAGAGACAGCTCAAAGCAGTAGCTTTTTCCCCACGTCGGGAGAGAGGATGGA
GGAGGAAATCCACCAGGCTCATTTCACCCCGATTCCCTTTTTGCTCACGGATGTTTGCCT
TGTAAGGATTAATCAACTTACTAGGGTGGGAAGTCCATGAAAGCCAAGGTGAAGGCATAG
TCCTTTAGCTCTATGGGTGTTCGAAGTACATTTATATCCAAATGTTAATAAACATAAATG

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-720, gnl|bosTau2|chr26 (23243260-23242535)
               

               
               1-720, gnl|Hg17|chr10 (117812682-117811959)
               

               
               1-720, gnl|Mm7|chr19 (58153371-58152721)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-720, gnl|bosTau2|chr26 (23243260-23242535)
               

               
               1-720, gnl|Hg17|chr10 (117812682-117811959)
               

               
               1-720, gnl|Mm7|chr19 (58153371-58152721)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               elu (0.385356)
               

               
               cmu (0.186393)
               

               
               sto (0.179824)
               

               
               nmm (0.132802)
               

               
               ldo (0.0970026)

Expressed library(ies): 5 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               elu (0.385356)
               

               
               cmu (0.186393)
               

               
               sto (0.179824)
               

               
               nmm (0.132802)
               

               
               ldo (0.0970026)

	1-720, gnl\|bosTau2\|chr26 (23243260-23242535)
	1-720, gnl\|Hg17\|chr10 (117812682-117811959)
	1-720, gnl\|Mm7\|chr19 (58153371-58152721)

	elu (0.385356)
	cmu (0.186393)
	sto (0.179824)
	nmm (0.132802)
	ldo (0.0970026)