Non-Coding RNA Search

Ss1.1-Pig3-SRG8028J07.3

Sequence:


               
               ATTCTTTTCTTGGGCCAGAACGCTCCAGGAGCAGCAGAAGGTAGCACAGAGGATTAAAAA
AAGTGAAGCACCAACAGAAGTAACACATTTCTCACCAAAGTCAATTCCTGATTATGACTT
TGAAAGTGATGAGATTGTTGCTGTTTGTGCAGCTATTGCTGAAAAACAGAAGACAGTTTC
AGCAAATAAAACAATGGTTATCGTGTCAGCTTCTGGGACTGTAGAGACTGTGACTGAGAA
GGAAGATGGTGCTGCGCCGCCAGATGGCTCTGTTTTTATCAAAGCCCGATGAAGCTCAGC
AGGAGTCATTGGAATCTGTCTTTGATTTTGCCACTTGAAGTTTTAGGCATGGGGGCATTT
ACTGCGGAGAAACAGGGCAAAACTCCTGTTTATAAATAGGTTTCTCAGATGAGCCATAGA
AAAACTAAATTGAGGAATTATTGTATAGTGTTTGGACTATACTTTGTTAAGTTATGATTT
CCTCCTAAGATTAAAATTCTGAGTACAATATTTGCTTAATAAGCTTAAATAACTTAATGC
AAATATATGAGTGAATGCTTTTCAAAGACACAACCTGAACAGTAAATTCTCAGATAGTGC
ATAACTTGACCACCAGTGTTATTAAAATGTTGACTTGTTGACTTTTGCTTTATGATAAAG
GAGGTAGGTGATTTCTCCCCCTGATAGAAATGTACTGTTACTACTCACTCTTCTGTTTTT
CTTGCCTCATTAGAGTAAGACTCTCACAAAGCTTGACCCCCCCTGATACTCATTTTGATT
CCACCCCCCTATTGGGTTATACATAGACTCTTTGAAAGTTTGGCTGAAACCGCCCGCAAA
TGTGTCACATGCTGAACATTTTCTGAATTTTCTCTGAACTCCGATTTGGGCTTTGGCTTA
TGTTTTAACTTTAAAATTATAACAAAGGTTGACCCCCCCCTCAGTATTTGTGAGATGTAT
AAAGTACTGATAAACGTCCAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATTCTTTTCTTGGGCCAGAACGCTCCAGGAGCAGCAGAAGGTAGCACAGAGGATTAAAAA
AAGTGAAGCACCAACAGAAGTAACACATTTCTCACCAAAGTCAATTCCTGATTATGACTT
TGAAAGTGATGAGATTGTTGCTGTTTGTGCAGCTATTGCTGAAAAACAGAAGACAGTTTC
AGCAAATAAAACAATGGTTATCGTGTCAGCTTCTGGGACTGTAGAGACTGTGACTGAGAA
GGAAGATGGTGCTGCGCCGCCAGATGGCTCTGTTTTTATCAAAGCCCGATGAAGCTCAGC
AGGAGTCATTGGAATCTGTCTTTGATTTTGCCACTTGAAGTTTTAGGCATGGGGGCATTT
ACTGCGGAGAAACAGGGCAAAACTCCTGTTTATAAATAGGTTTCTCAGATGAGCCATAGA
AAAACTAAATTGAGGAATTATTGTATAGTGTTTGGACTATACTTTGTTAAGTTATGATTT
CCTCCTAAGATTAAAATTCTGAGTACAATATTTGCTTAATAAGCTTAAATAACTTAATGC
AAATATATGAGTGAATGCTTTTCAAAGACACAACCTGAACAGTAAATTCTCAGATAGTGC
ATAACTTGACCACCAGTGTTATTAAAATGTTGACTTGTTGACTTTTGCTTTATGATAAAG
GAGGTAGGTGATTTCTCCCCCTGATAGAAATGTACTGTTACTACTCACTCTTCTGTTTTT
CTTGCCTCATTAGAGTAAGACTCTCACAAAGCTTGACCCCCCCTGATACTCATTTTGATT
CCACCCCCCTATTGGGTTATACATAGACTCTTTGAAAGTTTGGCTGAAACCGCCCGCAAA
TGTGTCACATGCTGAACATTTTCTGAATTTTCTCTGAACTCCGATTTGGGCTTTGGCTTA
TGTTTTAACTTTAAAATTATAACAAAGGTTGACCCCCCCCTCAGTATTTGTGAGATGTAT
AAAGTACTGATAAACGTCCAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61838967|ref|XP_609769.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61838967|ref|XP_609769.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               85-244, + strand, RNAz p=0.912692

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               85-244, + strand, RNAz p=0.912692

Homologous human UTR: 2 entry(ies)

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Homologous human UTR: 2 entry(ies)

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               3' of BC015701, +
               

               
               5' of NM_012382, +

Homologous human UTR: 2 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of BC015701, +
               

               
               5' of NM_012382, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               6-978, gnl|bosTau2|chr20 (19883599-19882652)
               

               
               6-978, gnl|Hg17|chr5 (40752290-40751325)
               

               
               6-978, gnl|Mm7|chr15 (5042091-5043087)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               6-978, gnl|bosTau2|chr20 (19883599-19882652)
               

               
               6-978, gnl|Hg17|chr5 (40752290-40751325)
               

               
               6-978, gnl|Mm7|chr15 (5042091-5043087)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               bfe (0.149858)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               bfe (0.149858)

	6-978, gnl\|bosTau2\|chr20 (19883599-19882652)
	6-978, gnl\|Hg17\|chr5 (40752290-40751325)
	6-978, gnl\|Mm7\|chr15 (5042091-5043087)