Ss1.1-Pig3-SRG8028J17.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TGCTGCCTGATGACATGAAGACTCTGAAGCCCACGCTATTTCCTGTGGTGCCTCGACTCC TTAACAAGATTTATGATAAGGTACAAAGTGAAGCTAAGTCACCCCTGAAGAAATTCTTGT TGAACTTGGCTATTGCCAGTAAATTCAATGAAGTGAAAAGGGGTGTCATCAGACGTGACA GTTTCTGGGACAAGCTCATCTTCGCAAAGATCCAGGAAAGCCTGGGTGGGAGGATACACT TCATGATCACTGCAGCTGCCCCGGTCTCCTCTCCCGTCTTGATGTTCTTCCGGGCAGCAA TGGGATGTCCGGTGTTTGAAGCTTATGGTCAAACGGAATGCACTGCTGGCTGTACACTTA CGTCACCTGGGGACTGGACATCAGGCCATGTTGGGGTCCCCCTAGATTGCAACCACGTGA AGCTGGAAGATGTAGCTGACATGAACTACTATTCAGTGAACAATGAAGGAGAGATCTGCA TCAAGGGCATTAATGTGTTCAAGGGATACTTGAAGGAACCAGAGAAGACAGAGGAAGCCT TGGACAAGGATGGCTGGCTTCACACAGGGGACATTGGTCGCTGGCTCCCGAATGGGACAC TAAAGATCATTGACAGAAAAAAGAACATTTTCAAGCTAGCTCAAGGAGAATATATTACTC CAGAGAAGATAGAAAGTATCTACATCAGGAGTGGTCCAGTGTCACAAATTTTTGTGCATG GGGAAAGCTTGCAGTCATTCCTAGTGGGAGTGGTGGTGCCTGACCCCGAGGTACTTCCCT CATTTGCAGCCAAGCTTGGGGTGAAGGGCTCTTTTGAAGATCTGTGCCAAAACCAGGTTG TAAAGGAAGCCATTTTAGAAGACTTGCTGCGAACTGGGAAAGAAGCTGGCCTTAAATCCT TTGAGCAGGTCAAATGCATCTATCTTCACCCAGAGCCATTTTCCATCAAAAATGGGCTTT TGACACCAACCTTGAAAGCAAAGCGGGGAGAGCTCTTCAAGTACTTTCGCACTCAAATCG ACAGTTTATATGAGAACACGCAGGAGTAGCTTAAGTTTGCTGCTGATCAGGAAGCTATAG GGGAAGGAGTTGAAACTCATGTTAAGTGCACTCTTCCAGTGAATCAAGCAAAGCACTGAG TTAAGCTGCCCTGAATTGGAAACAGAGACTCACGGACAAGCACGCAGCCCACACCACAGG CTTGTCTGCCGGGAAGGAACTGACTGGACTTTCCTCCCCTGGACTCTGGTGCCTGCTGTA ACTCACCCCCATTCAACACGTGTTGCTTCCACTTGTAAGTGTAGAGTGTTTAAAATAAAC TATTGTGGGTAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TGCTGCCTGATGACATGAAGACTCTGAAGCCCACGCTATTTCCTGTGGTGCCTCGACTCC TTAACAAGATTTATGATAAGGTACAAAGTGAAGCTAAGTCACCCCTGAAGAAATTCTTGT TGAACTTGGCTATTGCCAGTAAATTCAATGAAGTGAAAAGGGGTGTCATCAGACGTGACA GTTTCTGGGACAAGCTCATCTTCGCAAAGATCCAGGAAAGCCTGGGTGGGAGGATACACT TCATGATCACTGCAGCTGCCCCGGTCTCCTCTCCCGTCTTGATGTTCTTCCGGGCAGCAA TGGGATGTCCGGTGTTTGAAGCTTATGGTCAAACGGAATGCACTGCTGGCTGTACACTTA CGTCACCTGGGGACTGGACATCAGGCCATGTTGGGGTCCCCCTAGATTGCAACCACGTGA AGCTGGAAGATGTAGCTGACATGAACTACTATTCAGTGAACAATGAAGGAGAGATCTGCA TCAAGGGCATTAATGTGTTCAAGGGATACTTGAAGGAACCAGAGAAGACAGAGGAAGCCT TGGACAAGGATGGCTGGCTTCACACAGGGGACATTGGTCGCTGGCTCCCGAATGGGACAC TAAAGATCATTGACAGAAAAAAGAACATTTTCAAGCTAGCTCAAGGAGAATATATTACTC CAGAGAAGATAGAAAGTATCTACATCAGGAGTGGTCCAGTGTCACAAATTTTTGTGCATG GGGAAAGCTTGCAGTCATTCCTAGTGGGAGTGGTGGTGCCTGACCCCGAGGTACTTCCCT CATTTGCAGCCAAGCTTGGGGTGAAGGGCTCTTTTGAAGATCTGTGCCAAAACCAGGTTG TAAAGGAAGCCATTTTAGAAGACTTGCTGCGAACTGGGAAAGAAGCTGGCCTTAAATCCT TTGAGCAGGTCAAATGCATCTATCTTCACCCAGAGCCATTTTCCATCAAAAATGGGCTTT TGACACCAACCTTGAAAGCAAAGCGGGGAGAGCTCTTCAAGTACTTTCGCACTCAAATCG ACAGTTTATATGAGAACACGCAGGAGTAGCTTAAGTTTGCTGCTGATCAGGAAGCTATAG GGGAAGGAGTTGAAACTCATGTTAAGTGCACTCTTCCAGTGAATCAAGCAAAGCACTGAG TTAAGCTGCCCTGAATTGGAAACAGAGACTCACGGACAAGCACGCAGCCCACACCACAGG CTTGTCTGCCGGGAAGGAACTGACTGGACTTTCCTCCCCTGGACTCTGGTGCCTGCTGTA ACTCACCCCCATTCAACACGTGTTGCTTCCACTTGTAAGTGTAGAGTGTTTAAAATAAAC TATTGTGGGTAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 79-197, + strand, RNAz p=0.565163 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 79-197, + strand, RNAz p=0.565163 |
| Aligned organism(s): 24 entry(ies) | More info |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
| 79-227, gnl|bosTau2|chr26 (21338514-21338661) | |
| 79-227, gnl|canFam2|chr28 (26471766-26471907) | |
| 79-227, gnl|danRer3|chr12 (29112351-29112492) | |
| 79-227, gnl|dasNov1|scaffold_1276 (162795-162654) | |
| 79-227, gnl|echTel1|scaffold_107762 (642-783) | |
| 79-227, gnl|fr1|chrUn (288121701-288121840) | |
| 79-227, gnl|hg17|chr10 (114166634-114166775) | |
| 79-227, gnl|Hg17|chr10 (114166634-114166781) | |
| 79-227, gnl|loxAfr1|scaffold_4278 (55079-55220) | |
| 79-227, gnl|mm7|chr19 (55202060-55202201) | |
| 79-227, gnl|Mm7|chr19 (55202060-55202207) | |
| 79-227, gnl|monDom2|scaffold_14 (50117832-50117690) | |
| 79-227, gnl|oryCun1|scaffold_186012 (97115-97243) | |
| 79-227, gnl|panTro1|chr8 (116093966-116094107) | |
| 79-227, gnl|rheMac2|chr9 (112077143-112077284) | |
| 79-227, gnl|rn3|chr1 (261801732-261801873) | |
| 79-227, gnl|tetNig1|chr2 (1028795-1028936) | |
| 79-227, gnl|xenTro1|scaffold_510 (886443-886302) | |
| 584-734, gnl|bosTau2|chr26 (21345127-21345277) | |
| 584-734, gnl|Hg17|chr10 (114175079-114175229) | |
| 584-734, gnl|Mm7|chr19 (55207814-55207964) | |
| 906-1055, gnl|bosTau2|chr26 (21347306-21347455) | |
| 906-1055, gnl|Hg17|chr10 (114176963-114177112) | |
| 906-1055, gnl|Mm7|chr19 (55209604-55209756) |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 79-227, gnl|bosTau2|chr26 (21338514-21338661) | |
| 79-227, gnl|canFam2|chr28 (26471766-26471907) | |
| 79-227, gnl|danRer3|chr12 (29112351-29112492) | |
| 79-227, gnl|dasNov1|scaffold_1276 (162795-162654) | |
| 79-227, gnl|echTel1|scaffold_107762 (642-783) | |
| 79-227, gnl|fr1|chrUn (288121701-288121840) | |
| 79-227, gnl|hg17|chr10 (114166634-114166775) | |
| 79-227, gnl|Hg17|chr10 (114166634-114166781) | |
| 79-227, gnl|loxAfr1|scaffold_4278 (55079-55220) | |
| 79-227, gnl|mm7|chr19 (55202060-55202201) | |
| 79-227, gnl|Mm7|chr19 (55202060-55202207) | |
| 79-227, gnl|monDom2|scaffold_14 (50117832-50117690) | |
| 79-227, gnl|oryCun1|scaffold_186012 (97115-97243) | |
| 79-227, gnl|panTro1|chr8 (116093966-116094107) | |
| 79-227, gnl|rheMac2|chr9 (112077143-112077284) | |
| 79-227, gnl|rn3|chr1 (261801732-261801873) | |
| 79-227, gnl|tetNig1|chr2 (1028795-1028936) | |
| 79-227, gnl|xenTro1|scaffold_510 (886443-886302) | |
| 584-734, gnl|bosTau2|chr26 (21345127-21345277) | |
| 584-734, gnl|Hg17|chr10 (114175079-114175229) | |
| 584-734, gnl|Mm7|chr19 (55207814-55207964) | |
| 906-1055, gnl|bosTau2|chr26 (21347306-21347455) | |
| 906-1055, gnl|Hg17|chr10 (114176963-114177112) | |
| 906-1055, gnl|Mm7|chr19 (55209604-55209756) |
| Expressed library(ies): 15 entry(ies) | More info |
| Expressed library(ies): 15 entry(ies) | Help | Less info |
| sin (0.524843) | |
| cje (0.495704) | |
| rec (0.346141) | |
| mgp (0.230681) | |
| tes (0.207814) | |
| sto (0.179824) | |
| ill (0.175593) | |
| duo (0.172801) | |
| nje (0.16592) | |
| nco (0.161734) | |
| liv (0.146284) | |
| cst (0.140036) | |
| hlv (0.139256) | |
| che (0.136314) | |
| jej (0.0989218) |
| Expressed library(ies): 15 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| sin (0.524843) | |
| cje (0.495704) | |
| rec (0.346141) | |
| mgp (0.230681) | |
| tes (0.207814) | |
| sto (0.179824) | |
| ill (0.175593) | |
| duo (0.172801) | |
| nje (0.16592) | |
| nco (0.161734) | |
| liv (0.146284) | |
| cst (0.140036) | |
| hlv (0.139256) | |
| che (0.136314) | |
| jej (0.0989218) |