Non-Coding RNA Search

Ss1.1-Pig3-SRG8028M16.3

Sequence:


               
               AAACTTAGGCTTTGAGACATCAGCCTTTAAACTCACCACAGAGTTTGTGGATGTGATGGG
CGGCCTGGATGGCGACATGTTCAACTACTACAAGATGCTGATGCTGCAGGGGCTGATTGC
TGCTCGGAAACACATGGATAAGGTGGTGCAGATCGTGGAGATCATGCAGCAAGGTTCTCA
GCTTCCTTGCTTCCATGGCTCCAGCACCATCCGCAACCTCAAGGAGAGGTTCCACATGAG
CATGACGGAGGAGCAGCTGCAGCTGCTGGTGGAGCAGATGGTGGACGGCAGCATGCGGTC
GATCACCACCAAACTCTACGACGGCTTCCAGTACCTCACCAACGGCATCATGTGACACCC
CCTTCTCTGGCCCCCAGAGCAGTGGGGAGTCAGGGGACCCTCCCTGGGAAGGCCCTTGGA
GAAACCCTAAACCAGGACGCCCCACCCACCCACCCATCCACCAAGGGAAATGGAAGGCAA
GAAGTATGAAGGATCATGTGGTAACTGTGGAGGGTGCCAGGGGATGGGAGAGCCAGCTGT
GGGGGGTCCAGGCGTGCCGGGGCTTCCTGGCACCCCCGCCCCCGCCTGTGTCAGTATTAT
CACCTGACAGACTCCAGGACTCGCTGCCCTCCAGAGAACAGAAGTGATAAGTGTGAGGAC
ACTGGGGCCTTCTTCTCACCAGGGTCCGAGAGGTTCTTCCCACAGCCATCCTCTTAATCT
GTTCTGGGTCCCAGGAAGCGGCGAAGAGTAGGTTCTTGGTACTTAGGACTTGATCCTGTG
GTTGGCCTTTGGCCATGCTGCTGCCCGACTGTCCCTGCCCGGGGACTGGCCCTGGCCCGA
GTTCCCCTTGGTAGGTGGGCTCTGGCATAGGGTCCTGCACTTGCTGAGGAAGGGAATTAT
CACAGCCCCTCCAGTCTGAGGGTACTGGCCCAGCCGCGGGGGAATTCCTTGCCCTGATCC
CTTCCCCACACCCAGGGAAATAGCTCTCAATTTTTTATTTTTAATTTTTGTTTGAAATAA
AGTCCTTAGTTAGCAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAACTTAGGCTTTGAGACATCAGCCTTTAAACTCACCACAGAGTTTGTGGATGTGATGGG
CGGCCTGGATGGCGACATGTTCAACTACTACAAGATGCTGATGCTGCAGGGGCTGATTGC
TGCTCGGAAACACATGGATAAGGTGGTGCAGATCGTGGAGATCATGCAGCAAGGTTCTCA
GCTTCCTTGCTTCCATGGCTCCAGCACCATCCGCAACCTCAAGGAGAGGTTCCACATGAG
CATGACGGAGGAGCAGCTGCAGCTGCTGGTGGAGCAGATGGTGGACGGCAGCATGCGGTC
GATCACCACCAAACTCTACGACGGCTTCCAGTACCTCACCAACGGCATCATGTGACACCC
CCTTCTCTGGCCCCCAGAGCAGTGGGGAGTCAGGGGACCCTCCCTGGGAAGGCCCTTGGA
GAAACCCTAAACCAGGACGCCCCACCCACCCACCCATCCACCAAGGGAAATGGAAGGCAA
GAAGTATGAAGGATCATGTGGTAACTGTGGAGGGTGCCAGGGGATGGGAGAGCCAGCTGT
GGGGGGTCCAGGCGTGCCGGGGCTTCCTGGCACCCCCGCCCCCGCCTGTGTCAGTATTAT
CACCTGACAGACTCCAGGACTCGCTGCCCTCCAGAGAACAGAAGTGATAAGTGTGAGGAC
ACTGGGGCCTTCTTCTCACCAGGGTCCGAGAGGTTCTTCCCACAGCCATCCTCTTAATCT
GTTCTGGGTCCCAGGAAGCGGCGAAGAGTAGGTTCTTGGTACTTAGGACTTGATCCTGTG
GTTGGCCTTTGGCCATGCTGCTGCCCGACTGTCCCTGCCCGGGGACTGGCCCTGGCCCGA
GTTCCCCTTGGTAGGTGGGCTCTGGCATAGGGTCCTGCACTTGCTGAGGAAGGGAATTAT
CACAGCCCCTCCAGTCTGAGGGTACTGGCCCAGCCGCGGGGGAATTCCTTGCCCTGATCC
CTTCCCCACACCCAGGGAAATAGCTCTCAATTTTTTATTTTTAATTTTTGTTTGAAATAA
AGTCCTTAGTTAGCAAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|37589499|gb|AAH59895.1|

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               gi|37589499|gb|AAH59895.1|

Predicted RNA structure(s): 3 entry(ies)

More info

Predicted RNA structure(s): 3 entry(ies)

Help | Less info


               
               165-322, - strand, RNAz p=0.946517
               

               
               363-552, - strand, RNAz p=0.886535
               

               
               886-1011, - strand, RNAz p=0.99884

Predicted RNA structure(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               165-322, - strand, RNAz p=0.946517
               

               
               363-552, - strand, RNAz p=0.886535
               

               
               886-1011, - strand, RNAz p=0.99884

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               165-1034, gnl|bosTau2|chr3 (16258258-16259147)
               

               
               165-1034, gnl|Hg17|chr1 (148078591-148077682)
               

               
               165-1034, gnl|Mm7|chr3 (94879698-94880570)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               165-1034, gnl|bosTau2|chr3 (16258258-16259147)
               

               
               165-1034, gnl|Hg17|chr1 (148078591-148077682)
               

               
               165-1034, gnl|Mm7|chr3 (94879698-94880570)

Expressed library(ies): 9 entry(ies)

More info

Expressed library(ies): 9 entry(ies)

Help | Less info


               
               eye (0.341006)
               

               
               cag (0.151194)
               

               
               spl (0.143184)
               

               
               lnt (0.142308)
               

               
               ute (0.132784)
               

               
               eep (0.122564)
               

               
               ecc (0.115035)
               

               
               jca (0.11396)
               

               
               nbm (0.0993246)

Expressed library(ies): 9 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eye (0.341006)
               

               
               cag (0.151194)
               

               
               spl (0.143184)
               

               
               lnt (0.142308)
               

               
               ute (0.132784)
               

               
               eep (0.122564)
               

               
               ecc (0.115035)
               

               
               jca (0.11396)
               

               
               nbm (0.0993246)

	165-322, - strand, RNAz p=0.946517
	363-552, - strand, RNAz p=0.886535
	886-1011, - strand, RNAz p=0.99884

	165-1034, gnl\|bosTau2\|chr3 (16258258-16259147)
	165-1034, gnl\|Hg17\|chr1 (148078591-148077682)
	165-1034, gnl\|Mm7\|chr3 (94879698-94880570)

	eye (0.341006)
	cag (0.151194)
	spl (0.143184)
	lnt (0.142308)
	ute (0.132784)
	eep (0.122564)
	ecc (0.115035)
	jca (0.11396)
	nbm (0.0993246)