Non-Coding RNA Search

Ss1.1-Pig3-SRG8028N05.3

Sequence:


               
               GAACGGGGATAGCTGTCTTCCTCATGCCTATTAGTGTAGGGAAGTTAGGATCTAAAGGTG
TAAAGCAAAAGTATTGAAGGGAATAGCCAAAGACAACAGTTGTTTTTTTAAACTTTCTCT
AATGTAGCAGGGCTGAGGCCTTCGGCCTATGACTGCTTATTTTAACAAGAACCCAGCAAA
CTGTTTCTCAATCTGAGGAAACACAGCTCTCACATCAGGATATAATAGTAGAATAAGGGT
GACTTCTTACTCCCTTTTACCTCGTGTTCATCTTGGCTATTTAGCACCTTGAAGATCCCT
AAAAATACTGGGTCTGTGTTCCCTTGTTTTCCCAGGGGAAAAAACTGCAAGTGGAGTGGA
TCTGAGAAAATAGTGCCTCTTGAATATTAAATTCTTTTATGGCAACTCCAAAGGATAGAG
AGAAATTGATTATAGCTCCTCTTTAAATGTCCTATGCCATCAGGTGGTGTTAGAGACATT
GAGATAACCAAGCAATATTTCAGACATCTGCACGATCATGAGGACATCACTGCATGTTAC
AGTGATGTCAGCAGTTTAGTTACTTAGAACAATTAAAAGTTACTCTTAACAGCCACGTTA
ATAGTTCTAAATGCTCTAATGAGCTACAAGTTTTTGTAGTCTCAGAGTATGTGTTGGATT
ACTTTTCAATGTTATGGTCTCATGTTTACCCTTTGTGTACCTGTGATATGCAAAATATGA
AGAGACCCTTGGCCTCCAGGAGTTTACATTCTCATGGTGCTGCTGGTGCAAGCAAATTGC
TTCTAGTTTATTCAGAACATTGTTTGGCTGTTAATTATACCATATTTGGAAGGATTTCTT
GGCCAACAGTTTTCAGAAGCAGAGGGCTATGCTATACTTCAGGGCATTGATTTTGAGTTT
ACATTGTATTAGCTTTGCTATTCATAAACTCCTTTTCCCCAGGGAGCTGTGCAGGTAATG
CTCATTAATGTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAACGGGGATAGCTGTCTTCCTCATGCCTATTAGTGTAGGGAAGTTAGGATCTAAAGGTG
TAAAGCAAAAGTATTGAAGGGAATAGCCAAAGACAACAGTTGTTTTTTTAAACTTTCTCT
AATGTAGCAGGGCTGAGGCCTTCGGCCTATGACTGCTTATTTTAACAAGAACCCAGCAAA
CTGTTTCTCAATCTGAGGAAACACAGCTCTCACATCAGGATATAATAGTAGAATAAGGGT
GACTTCTTACTCCCTTTTACCTCGTGTTCATCTTGGCTATTTAGCACCTTGAAGATCCCT
AAAAATACTGGGTCTGTGTTCCCTTGTTTTCCCAGGGGAAAAAACTGCAAGTGGAGTGGA
TCTGAGAAAATAGTGCCTCTTGAATATTAAATTCTTTTATGGCAACTCCAAAGGATAGAG
AGAAATTGATTATAGCTCCTCTTTAAATGTCCTATGCCATCAGGTGGTGTTAGAGACATT
GAGATAACCAAGCAATATTTCAGACATCTGCACGATCATGAGGACATCACTGCATGTTAC
AGTGATGTCAGCAGTTTAGTTACTTAGAACAATTAAAAGTTACTCTTAACAGCCACGTTA
ATAGTTCTAAATGCTCTAATGAGCTACAAGTTTTTGTAGTCTCAGAGTATGTGTTGGATT
ACTTTTCAATGTTATGGTCTCATGTTTACCCTTTGTGTACCTGTGATATGCAAAATATGA
AGAGACCCTTGGCCTCCAGGAGTTTACATTCTCATGGTGCTGCTGGTGCAAGCAAATTGC
TTCTAGTTTATTCAGAACATTGTTTGGCTGTTAATTATACCATATTTGGAAGGATTTCTT
GGCCAACAGTTTTCAGAAGCAGAGGGCTATGCTATACTTCAGGGCATTGATTTTGAGTTT
ACATTGTATTAGCTTTGCTATTCATAAACTCCTTTTCCCCAGGGAGCTGTGCAGGTAATG
CTCATTAATGTG

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               7-972, gnl|bosTau2|chr10 (26085971-26086924)
               

               
               7-972, gnl|Hg17|chr15 (39382388-39383363)
               

               
               7-972, gnl|Mm7|chr2 (119344823-119345692)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               7-972, gnl|bosTau2|chr10 (26085971-26086924)
               

               
               7-972, gnl|Hg17|chr15 (39382388-39383363)
               

               
               7-972, gnl|Mm7|chr2 (119344823-119345692)

Expressed library(ies): 9 entry(ies)

More info

Expressed library(ies): 9 entry(ies)

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               ste (0.270416)
               

               
               ece (0.229305)
               

               
               ldo (0.194005)
               

               
               fbs (0.175346)
               

               
               lun (0.150489)
               

               
               ret (0.128733)
               

               
               cbr (0.127975)
               

               
               ecc (0.115035)
               

               
               cbl (0.114797)

Expressed library(ies): 9 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ste (0.270416)
               

               
               ece (0.229305)
               

               
               ldo (0.194005)
               

               
               fbs (0.175346)
               

               
               lun (0.150489)
               

               
               ret (0.128733)
               

               
               cbr (0.127975)
               

               
               ecc (0.115035)
               

               
               cbl (0.114797)

	7-972, gnl\|bosTau2\|chr10 (26085971-26086924)
	7-972, gnl\|Hg17\|chr15 (39382388-39383363)
	7-972, gnl\|Mm7\|chr2 (119344823-119345692)

	ste (0.270416)
	ece (0.229305)
	ldo (0.194005)
	fbs (0.175346)
	lun (0.150489)
	ret (0.128733)
	cbr (0.127975)
	ecc (0.115035)
	cbl (0.114797)