Non-Coding RNA Search

Ss1.1-Pig4-TMW8001A08.5

Sequence:


               
               GGGAGGCCCCTCCCCCCTCCCGGAGGCCATGCCCCCTGGGGCGGGGGAGAGGACGTCTCT
GCGGGCCCCCTTCACCCCGTCTGCACCCCCATTCCCCGGAGCCCTGGAGGGGAGAGATCG
GGCCCTGGCGCCAGCACACAGGCTGCCCACCCCCGTGCCCGGCAGCACAGGCCTGCGGCA
CCCAGCTTTCACAGATCTGCTCTAGAGTCTGGGTGCTGGGGAACAGAACTTCCAAGAACA
AGCAGCCTTCGCAGAGGACGCGCCCCGCCCCAGGGGGCTGCGGAGGATCTGAGGCGAAGA
CTTGGCCGGCTCCTGCCTTGGAGGCGCCTCGGCCGGCGGGCGAGATCCCCACCCTCGGGA
ATGCAGAGCCTTCTCCGCATGTGTGCGTGTAGCTGTGTCTGTGTATTTATATGTATGTCG
CTCTTCAAGAAGCAACCTAGTTTATGGGGCAGCTGGACTTTGCATGTTAGAGTGAACCCC
CTTTCCCCTCGCCTGCCGCCGCCCCTCTCTCCAGGGCCCTGCCCCTCTCCCCGGCCCCCT
GGGCAGCCAGCCTTGGTGTTCCCTGTGGAGAAAAGGATTGTGGGAAACTCCAGGACTCTT
CCCACCCATCCCCCAGCACCTGCCTGCTGGGGCTGCCTGCATGCCTCCCCCCAGAGCCCA
GGGGGACCCCGTCCCCAGTTCCTTTCCCCCTTTTAACAAAGGAGAAGAAAGAGTTCCAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGAGGCCCCTCCCCCCTCCCGGAGGCCATGCCCCCTGGGGCGGGGGAGAGGACGTCTCT
GCGGGCCCCCTTCACCCCGTCTGCACCCCCATTCCCCGGAGCCCTGGAGGGGAGAGATCG
GGCCCTGGCGCCAGCACACAGGCTGCCCACCCCCGTGCCCGGCAGCACAGGCCTGCGGCA
CCCAGCTTTCACAGATCTGCTCTAGAGTCTGGGTGCTGGGGAACAGAACTTCCAAGAACA
AGCAGCCTTCGCAGAGGACGCGCCCCGCCCCAGGGGGCTGCGGAGGATCTGAGGCGAAGA
CTTGGCCGGCTCCTGCCTTGGAGGCGCCTCGGCCGGCGGGCGAGATCCCCACCCTCGGGA
ATGCAGAGCCTTCTCCGCATGTGTGCGTGTAGCTGTGTCTGTGTATTTATATGTATGTCG
CTCTTCAAGAAGCAACCTAGTTTATGGGGCAGCTGGACTTTGCATGTTAGAGTGAACCCC
CTTTCCCCTCGCCTGCCGCCGCCCCTCTCTCCAGGGCCCTGCCCCTCTCCCCGGCCCCCT
GGGCAGCCAGCCTTGGTGTTCCCTGTGGAGAAAAGGATTGTGGGAAACTCCAGGACTCTT
CCCACCCATCCCCCAGCACCTGCCTGCTGGGGCTGCCTGCATGCCTCCCCCCAGAGCCCA
GGGGGACCCCGTCCCCAGTTCCTTTCCCCCTTTTAACAAAGGAGAAGAAAGAGTTCCAAA

Aligned organism(s): 2 entry(ies)

More info

Aligned organism(s): 2 entry(ies)

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               1-720, gnl|bosTau2|chr25 (4568847-4568113)
               

               
               1-720, gnl|Hg17|chr16 (4599634-4598889)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-720, gnl|bosTau2|chr25 (4568847-4568113)
               

               
               1-720, gnl|Hg17|chr16 (4599634-4598889)

Expressed library(ies): 7 entry(ies)

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Expressed library(ies): 7 entry(ies)

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               fce (0.271592)
               

               
               nlu (0.191681)
               

               
               nep (0.183925)
               

               
               fbs (0.175346)
               

               
               nje (0.16592)
               

               
               lnt (0.142308)
               

               
               eep (0.122564)

Expressed library(ies): 7 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fce (0.271592)
               

               
               nlu (0.191681)
               

               
               nep (0.183925)
               

               
               fbs (0.175346)
               

               
               nje (0.16592)
               

               
               lnt (0.142308)
               

               
               eep (0.122564)

	1-720, gnl\|bosTau2\|chr25 (4568847-4568113)
	1-720, gnl\|Hg17\|chr16 (4599634-4598889)

	fce (0.271592)
	nlu (0.191681)
	nep (0.183925)
	fbs (0.175346)
	nje (0.16592)
	lnt (0.142308)
	eep (0.122564)