Non-Coding RNA Search

Ss1.1-Pig4-TMW8001A09.5

Sequence:


               
               TCGAATTTGCTCCAGGTGTCACTCTGCTCCCCCACGTGTTTGTAATCAACCAGCCGTCCT
GTTCGGGACCCAGAGAAAACGCCTTTGTCCACTTCGCCTCCCCGGGCAAAGGGCAGAGAT
AAAACCTCTGCGCAAAGCAAGGCGTCCTTAACCACCATCTCTTTCATTTGTTTGGTAGTT
TTATGTCATAATTGGAAGAAATTCCCTCCCCTCCTTCTTTTCGCTTCACTTTAAAATTCG
TATCACATGGAAATATCATAATTTTATGCATCCGGTGACTGGAACATATTGCTGTTGTAT
TTCCAACTGTCTCATCGTGGGTGAATGATATGTTTTTCCCAGAGAGAGAATGAATGCTCC
CCACATGCCCAGGCTAATGAAGGTAAATTGTCCTCAGCTTTTACGGGTGCCCCTCTGGGT
TAAATCCCAGCCCTGACGCTGCAAAAGCAGAAGTCTTCCCTGGGAGTTCAGCATCTCAGA
AACAACCACCGGAAACTAACTCATCAGCCACTTTAGGCTTCACAGTAGAGCTAACCGGCA
AGTGAGTTTCATACCCTAATTCCATCATCCCGAATTAAAGAACTCTTCCCTGTTACGTTT
GATCCATTGCGAGTGAAGCGATTTTCCTTTGGGACAGTTTGTCCTGTGGAAGCCTGTTCT
CACTTCCCTCTCCTCTGCTGCTTTCCACCGTTCCTTCTCTTCGTCACAGGAAATCACTCA
GATCTAGTGCCTCTCTACAGAGTCTTGCTCCACACTCCGCTACGCCGCCTACCAGCCTGG
CTTCTCTGGGCTCCTCCTGTGATAGGATGTGAAAACCCAGACTAATTTGCAGCATCGTAG
TATCAGGCCTTCGAGGCACGCATCAGCCTGCTGTTGTCTTGGAAGAGGAAGGATAGTCGC
TCACCCCATTACGCAGGTTCTCCTCTTGTCCCTTGTATCTTACAAGAATAAAGGAGCTAC
TCTTGGACATTATAAAGGCGTTAGAAATTGTATTTAGCTAATTACAAGTTGAGTCAGAAT
CACTTGGTCAGTAAGATTCATCCTACTGAGGACTGTAGAGACGAGTGCATGAGTCGGGAT
TATTCTTCAGCTGTGATGGACTGCTGTAGAAATCAGCAAGCCGTCTCTCCCGGGGGTGCT
GACTGCTCTTTCAAGCTACTCCCAACGGATTGCCAAGGCCATCTCTTCCTCTCGAAGGGG
GACATAGTCTGTAGAGTAAAGACGGGGCACGTAGAGTTGCATGTTAGTCTCTGTCATTAC
TTACTCGCTAACGTTCTCCAGAACTCACGCGTGGGCTCCACATGCCGTTAGATTTGTGCG
TTTTATCTTACTGACCATCCTGTTGCAGCCAGTGTTCAGTTATCTGCTCTGTGTGCCAAA
ACCAGTAATGCCTTTCATGGCCCTTTAGTGCAGACAAGATCTGCACTGATTAGTCTTTGC
TGTCCTGATCTTACAAGTTTACCAATCACGATGGAATAAAGTGTGAGTTGTACTGTGAAA
AAAAAAAAAAAAAAAAAAAAAAAAGGGGGGGCCCTTGGGGGGCCTTTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCGAATTTGCTCCAGGTGTCACTCTGCTCCCCCACGTGTTTGTAATCAACCAGCCGTCCT
GTTCGGGACCCAGAGAAAACGCCTTTGTCCACTTCGCCTCCCCGGGCAAAGGGCAGAGAT
AAAACCTCTGCGCAAAGCAAGGCGTCCTTAACCACCATCTCTTTCATTTGTTTGGTAGTT
TTATGTCATAATTGGAAGAAATTCCCTCCCCTCCTTCTTTTCGCTTCACTTTAAAATTCG
TATCACATGGAAATATCATAATTTTATGCATCCGGTGACTGGAACATATTGCTGTTGTAT
TTCCAACTGTCTCATCGTGGGTGAATGATATGTTTTTCCCAGAGAGAGAATGAATGCTCC
CCACATGCCCAGGCTAATGAAGGTAAATTGTCCTCAGCTTTTACGGGTGCCCCTCTGGGT
TAAATCCCAGCCCTGACGCTGCAAAAGCAGAAGTCTTCCCTGGGAGTTCAGCATCTCAGA
AACAACCACCGGAAACTAACTCATCAGCCACTTTAGGCTTCACAGTAGAGCTAACCGGCA
AGTGAGTTTCATACCCTAATTCCATCATCCCGAATTAAAGAACTCTTCCCTGTTACGTTT
GATCCATTGCGAGTGAAGCGATTTTCCTTTGGGACAGTTTGTCCTGTGGAAGCCTGTTCT
CACTTCCCTCTCCTCTGCTGCTTTCCACCGTTCCTTCTCTTCGTCACAGGAAATCACTCA
GATCTAGTGCCTCTCTACAGAGTCTTGCTCCACACTCCGCTACGCCGCCTACCAGCCTGG
CTTCTCTGGGCTCCTCCTGTGATAGGATGTGAAAACCCAGACTAATTTGCAGCATCGTAG
TATCAGGCCTTCGAGGCACGCATCAGCCTGCTGTTGTCTTGGAAGAGGAAGGATAGTCGC
TCACCCCATTACGCAGGTTCTCCTCTTGTCCCTTGTATCTTACAAGAATAAAGGAGCTAC
TCTTGGACATTATAAAGGCGTTAGAAATTGTATTTAGCTAATTACAAGTTGAGTCAGAAT
CACTTGGTCAGTAAGATTCATCCTACTGAGGACTGTAGAGACGAGTGCATGAGTCGGGAT
TATTCTTCAGCTGTGATGGACTGCTGTAGAAATCAGCAAGCCGTCTCTCCCGGGGGTGCT
GACTGCTCTTTCAAGCTACTCCCAACGGATTGCCAAGGCCATCTCTTCCTCTCGAAGGGG
GACATAGTCTGTAGAGTAAAGACGGGGCACGTAGAGTTGCATGTTAGTCTCTGTCATTAC
TTACTCGCTAACGTTCTCCAGAACTCACGCGTGGGCTCCACATGCCGTTAGATTTGTGCG
TTTTATCTTACTGACCATCCTGTTGCAGCCAGTGTTCAGTTATCTGCTCTGTGTGCCAAA
ACCAGTAATGCCTTTCATGGCCCTTTAGTGCAGACAAGATCTGCACTGATTAGTCTTTGC
TGTCCTGATCTTACAAGTTTACCAATCACGATGGAATAAAGTGTGAGTTGTACTGTGAAA
AAAAAAAAAAAAAAAAAAAAAAAAGGGGGGGCCCTTGGGGGGCCTTTT

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               10-1497, gnl|bosTau2|chr3 (44355814-44357332)
               

               
               10-1497, gnl|Hg17|chr1 (85497682-85496190)
               

               
               10-1497, gnl|Mm7|chr3 (145790085-145791441)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               10-1497, gnl|bosTau2|chr3 (44355814-44357332)
               

               
               10-1497, gnl|Hg17|chr1 (85497682-85496190)
               

               
               10-1497, gnl|Mm7|chr3 (145790085-145791441)

Expressed library(ies): 12 entry(ies)

More info

Expressed library(ies): 12 entry(ies)

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               fcc (0.39557)
               

               
               cbr (0.383926)
               

               
               ebs (0.354904)
               

               
               fbs (0.350693)
               

               
               cli (0.305623)
               

               
               ece (0.229305)
               

               
               nlu (0.191681)
               

               
               hyp (0.142837)
               

               
               ese (0.126502)
               

               
               cly (0.120642)
               

               
               eru (0.120048)
               

               
               nbm (0.0993246)

Expressed library(ies): 12 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fcc (0.39557)
               

               
               cbr (0.383926)
               

               
               ebs (0.354904)
               

               
               fbs (0.350693)
               

               
               cli (0.305623)
               

               
               ece (0.229305)
               

               
               nlu (0.191681)
               

               
               hyp (0.142837)
               

               
               ese (0.126502)
               

               
               cly (0.120642)
               

               
               eru (0.120048)
               

               
               nbm (0.0993246)

	10-1497, gnl\|bosTau2\|chr3 (44355814-44357332)
	10-1497, gnl\|Hg17\|chr1 (85497682-85496190)
	10-1497, gnl\|Mm7\|chr3 (145790085-145791441)

	fcc (0.39557)
	cbr (0.383926)
	ebs (0.354904)
	fbs (0.350693)
	cli (0.305623)
	ece (0.229305)
	nlu (0.191681)
	hyp (0.142837)
	ese (0.126502)
	cly (0.120642)
	eru (0.120048)
	nbm (0.0993246)