Ss1.1-Pig4-TMW8001B01.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AATGTAGAACTGGCGTCACTCTCTGCTCTCACCGGTGCCACAATACGGCAGGCAGCTTCA CCTGTGGCTGCCCCCACGGCCTGGTGCTGGGCCCCGATGGGCGCACTTGCGCAGAAGGGG CCTCAGAGCCCCCAACCAGTGCCAGCATCCTCAGTGTGGCTGTTCGGGAAGCTGGACGTG AAGATCGTGCTCTGAGGCGGGAGATCCGCGAGCTGCGAGGGCGCCTGGAGCGGCTGGAGC AGTGGGCAGGTCAGGCTGGGGCCTGGGTCCGAGCCGTGCTGCCCATGCCGCCTGAAGAGC TGCAGCCCGAACAGGTGGCAGAGCTGTGGGGCCGGGGCGACCGGATCGAGTCTCTCAGTG ACCAGGTGCTGCTGCTGGAGGAGAAGCTAGGCGCCTGCTCCTGTGAGGACAACAGCCTGG GCCCAGGCCTCAGTCGGCGGAGATAAGGTGCTTCTGCAGGGCCCCTGCCCCCCTAATTTA TACAGAAACTGGATCCACTAATCCTCTGGGATTGGCCAGCTGGGGAGCTGCAGATAAGGG TATCTGCCCCTAAGGAGCAATGAACAGTGGACACTTTGGAAAACTGAAGACAGGAGGAGG GCAGGTTGTCTTGGCCCACCTCCAAGTCTGCCCGCTGGGGCAGACGCCTGGGTGAGGACT GCTTTTTTAACTCCTTAACAAACACAGCCAGAAAGTGCCCAGATCTCTCTCAATCTTTAT TCTTGGTTTCTTGCTGTTATCCAGATAATTAATAAAAATCAACCGCACAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AATGTAGAACTGGCGTCACTCTCTGCTCTCACCGGTGCCACAATACGGCAGGCAGCTTCA CCTGTGGCTGCCCCCACGGCCTGGTGCTGGGCCCCGATGGGCGCACTTGCGCAGAAGGGG CCTCAGAGCCCCCAACCAGTGCCAGCATCCTCAGTGTGGCTGTTCGGGAAGCTGGACGTG AAGATCGTGCTCTGAGGCGGGAGATCCGCGAGCTGCGAGGGCGCCTGGAGCGGCTGGAGC AGTGGGCAGGTCAGGCTGGGGCCTGGGTCCGAGCCGTGCTGCCCATGCCGCCTGAAGAGC TGCAGCCCGAACAGGTGGCAGAGCTGTGGGGCCGGGGCGACCGGATCGAGTCTCTCAGTG ACCAGGTGCTGCTGCTGGAGGAGAAGCTAGGCGCCTGCTCCTGTGAGGACAACAGCCTGG GCCCAGGCCTCAGTCGGCGGAGATAAGGTGCTTCTGCAGGGCCCCTGCCCCCCTAATTTA TACAGAAACTGGATCCACTAATCCTCTGGGATTGGCCAGCTGGGGAGCTGCAGATAAGGG TATCTGCCCCTAAGGAGCAATGAACAGTGGACACTTTGGAAAACTGAAGACAGGAGGAGG GCAGGTTGTCTTGGCCCACCTCCAAGTCTGCCCGCTGGGGCAGACGCCTGGGTGAGGACT GCTTTTTTAACTCCTTAACAAACACAGCCAGAAAGTGCCCAGATCTCTCTCAATCTTTAT TCTTGGTTTCTTGCTGTTATCCAGATAATTAATAAAAATCAACCGCACAAAAAAAAAAAA |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 40-160, - strand, RNAz p=0.873652 | |
| 42-160, + strand, RNAz p=0.949852 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 40-160, - strand, RNAz p=0.873652 | |
| 42-160, + strand, RNAz p=0.949852 |
| Aligned organism(s): 30 entry(ies) | More info |
| Aligned organism(s): 30 entry(ies) | Help | Less info |
| 1-160, gnl|bosTau2|chr23 (23703541-23703382) | |
| 1-160, gnl|canFam2|chr12 (4562633-4563171) | |
| 1-160, gnl|dasNov1|scaffold_55984 (13171-13663) | |
| 1-160, gnl|echTel1|scaffold_300027 (9499-8977) | |
| 1-160, gnl|hg17|chr6 (32242454-32242965) | |
| 1-160, gnl|Hg17|chr6 (32242851-32243010) | |
| 1-160, gnl|loxAfr1|scaffold_32936 (25517-25003) | |
| 1-160, gnl|mm7|chr17 (32700189-32699626) | |
| 1-160, gnl|Mm7|chr17 (32699738-32699579) | |
| 1-160, gnl|monDom2|scaffold_42 (17167242-17166696) | |
| 1-160, gnl|oryCun1|scaffold_210319 (41555-41042) | |
| 1-160, gnl|panTro1|chr5 (32611031-32611541) | |
| 1-160, gnl|rheMac2|chr4 (31788493-31789004) | |
| 1-160, gnl|rn3|chr20 (4236708-4237253) | |
| 1-160, gnl|tetNig1|chrUn_random (2702111-2701633) | |
| 241-397, gnl|bosTau2|chr23 (23703144-23702988) | |
| 241-397, gnl|canFam2|chr12 (4563334-4563617) | |
| 241-397, gnl|dasNov1|scaffold_55984 (13824-14107) | |
| 241-397, gnl|echTel1|scaffold_300027 (8812-8527) | |
| 241-397, gnl|fr1|chrUn (31061077-31060790) | |
| 241-397, gnl|hg17|chr6 (32243142-32243418) | |
| 241-397, gnl|Hg17|chr6 (32243256-32243412) | |
| 241-397, gnl|loxAfr1|scaffold_32936 (24837-24559) | |
| 241-397, gnl|mm7|chr17 (32699460-32699179) | |
| 241-397, gnl|Mm7|chr17 (32699339-32699183) | |
| 241-397, gnl|monDom2|scaffold_42 (17166060-17165725) | |
| 241-397, gnl|oryCun1|scaffold_210319 (40878-40596) | |
| 241-397, gnl|panTro1|chr5 (32611718-32611994) | |
| 241-397, gnl|rheMac2|chr4 (31789180-31789456) | |
| 241-397, gnl|rn3|chr20 (4237419-4237700) |
| Aligned organism(s): 30 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-160, gnl|bosTau2|chr23 (23703541-23703382) | |
| 1-160, gnl|canFam2|chr12 (4562633-4563171) | |
| 1-160, gnl|dasNov1|scaffold_55984 (13171-13663) | |
| 1-160, gnl|echTel1|scaffold_300027 (9499-8977) | |
| 1-160, gnl|hg17|chr6 (32242454-32242965) | |
| 1-160, gnl|Hg17|chr6 (32242851-32243010) | |
| 1-160, gnl|loxAfr1|scaffold_32936 (25517-25003) | |
| 1-160, gnl|mm7|chr17 (32700189-32699626) | |
| 1-160, gnl|Mm7|chr17 (32699738-32699579) | |
| 1-160, gnl|monDom2|scaffold_42 (17167242-17166696) | |
| 1-160, gnl|oryCun1|scaffold_210319 (41555-41042) | |
| 1-160, gnl|panTro1|chr5 (32611031-32611541) | |
| 1-160, gnl|rheMac2|chr4 (31788493-31789004) | |
| 1-160, gnl|rn3|chr20 (4236708-4237253) | |
| 1-160, gnl|tetNig1|chrUn_random (2702111-2701633) | |
| 241-397, gnl|bosTau2|chr23 (23703144-23702988) | |
| 241-397, gnl|canFam2|chr12 (4563334-4563617) | |
| 241-397, gnl|dasNov1|scaffold_55984 (13824-14107) | |
| 241-397, gnl|echTel1|scaffold_300027 (8812-8527) | |
| 241-397, gnl|fr1|chrUn (31061077-31060790) | |
| 241-397, gnl|hg17|chr6 (32243142-32243418) | |
| 241-397, gnl|Hg17|chr6 (32243256-32243412) | |
| 241-397, gnl|loxAfr1|scaffold_32936 (24837-24559) | |
| 241-397, gnl|mm7|chr17 (32699460-32699179) | |
| 241-397, gnl|Mm7|chr17 (32699339-32699183) | |
| 241-397, gnl|monDom2|scaffold_42 (17166060-17165725) | |
| 241-397, gnl|oryCun1|scaffold_210319 (40878-40596) | |
| 241-397, gnl|panTro1|chr5 (32611718-32611994) | |
| 241-397, gnl|rheMac2|chr4 (31789180-31789456) | |
| 241-397, gnl|rn3|chr20 (4237419-4237700) |
| Expressed library(ies): 4 entry(ies) | More info |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
| pty (0.285429) | |
| fbs (0.175346) | |
| ecc (0.115035) | |
| eje (0.0988338) |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| pty (0.285429) | |
| fbs (0.175346) | |
| ecc (0.115035) | |
| eje (0.0988338) |