Non-Coding RNA Search

Ss1.1-Pig4-TMW8001B10.5

Sequence:


               
               CCCTGTCCTTCCCGTCCCCCACTTGTCCCTCTTGTCCCTCCTGTCCCTGGCAATCCTAAA
TTCCTCATTTCTAGGACTTCCCATCCATCCACTCCCTGGCCTTTTCCCGTCTCCTGGCTG
CAGCCATGGAGTTACAGAAGGGAAAGGGGGCAGCAGCAGCAGCTGCTTCGGGAGCAGCGG
GAGGTGGAGGAGGAGCGGGAGCAGGAGCCCCAGGAGGGGGGAGGCTGCTACTTTCTACCA
GTTTGGATGCCAAGGATGAGTTAGAGGAGAGGTTGGAAAGATGTATGAGCATTGTGACAT
CGATGACCACTGGGGTCTCAGAGAGAGAGGCCAATGATGCCCTCAATGCCTACGTATGTA
AAGGCCCCCCGCAACACGAGGAAATCTGCCTGGGCCTCTTCACCCTTGTGCTTACCGAAC
CTGCCCAAGCCCAGAAGTGTTACCGGGACTTGGCTCTGGTGAGTCGTGACGGCATGAATA
TTGTCCTGAATAAAATCAACCAGATACTTATGGAGAAGTACTTGAAGTTGCAGGATACCT
GCCGTACTCAGTTGGTGTGGTTGGTCCGGGAACTGGTGAAGAGTGGGGTTCTGGGAGCCG
ATGGTGTTTGCATGACATTCATGAAGCAGATTGCTGGTAAGTTGGATGGCACGAGCATAA
CAAAGGAGAGGAGCCCGGGGCCTAAATCCAGCGATGGAGAAGGATTAAGTACCTGAGGGC
ATCCATTCCTGGATTGCTCTTTCCGTCTGACCCAGGCATCCTCTGGACATACATGTTGCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCCTGTCCTTCCCGTCCCCCACTTGTCCCTCTTGTCCCTCCTGTCCCTGGCAATCCTAAA
TTCCTCATTTCTAGGACTTCCCATCCATCCACTCCCTGGCCTTTTCCCGTCTCCTGGCTG
CAGCCATGGAGTTACAGAAGGGAAAGGGGGCAGCAGCAGCAGCTGCTTCGGGAGCAGCGG
GAGGTGGAGGAGGAGCGGGAGCAGGAGCCCCAGGAGGGGGGAGGCTGCTACTTTCTACCA
GTTTGGATGCCAAGGATGAGTTAGAGGAGAGGTTGGAAAGATGTATGAGCATTGTGACAT
CGATGACCACTGGGGTCTCAGAGAGAGAGGCCAATGATGCCCTCAATGCCTACGTATGTA
AAGGCCCCCCGCAACACGAGGAAATCTGCCTGGGCCTCTTCACCCTTGTGCTTACCGAAC
CTGCCCAAGCCCAGAAGTGTTACCGGGACTTGGCTCTGGTGAGTCGTGACGGCATGAATA
TTGTCCTGAATAAAATCAACCAGATACTTATGGAGAAGTACTTGAAGTTGCAGGATACCT
GCCGTACTCAGTTGGTGTGGTTGGTCCGGGAACTGGTGAAGAGTGGGGTTCTGGGAGCCG
ATGGTGTTTGCATGACATTCATGAAGCAGATTGCTGGTAAGTTGGATGGCACGAGCATAA
CAAAGGAGAGGAGCCCGGGGCCTAAATCCAGCGATGGAGAAGGATTAAGTACCTGAGGGC
ATCCATTCCTGGATTGCTCTTTCCGTCTGACCCAGGCATCCTCTGGACATACATGTTGCA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q5VUQ6_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q5VUQ6_HUMAN

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               17-269, + strand, RNAz p=0.996848
               

               
               87-269, - strand, RNAz p=0.99375

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               17-269, + strand, RNAz p=0.996848
               

               
               87-269, - strand, RNAz p=0.99375

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_023015, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_023015, +

Aligned organism(s): 16 entry(ies)

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Aligned organism(s): 16 entry(ies)

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               17-269, gnl|bosTau2|chr3 (7953575-7953825)
               

               
               17-269, gnl|canFam2|chr7 (46338568-46338393)
               

               
               17-269, gnl|echTel1|scaffold_276475 (6009-5735)
               

               
               17-269, gnl|hg17|chr1 (150514014-150514285)
               

               
               17-269, gnl|Hg17|chr1 (150514076-150514333)
               

               
               17-269, gnl|loxAfr1|scaffold_2219 (70838-71073)
               

               
               17-269, gnl|mm7|chr3 (90563839-90563589)
               

               
               17-269, gnl|Mm7|chr3 (90563792-90563539)
               

               
               17-269, gnl|monDom2|scaffold_59 (4340394-4340118)
               

               
               17-269, gnl|oryCun1|scaffold_175331 (60049-60316)
               

               
               17-269, gnl|panTro1|chr1 (132494582-132494853)
               

               
               17-269, gnl|rheMac2|chr1 (132239009-132239283)
               

               
               17-269, gnl|rn3|chr2 (182652018-182651768)
               


               
               550-780, gnl|bosTau2|chr3 (7970087-7970327)
               

               
               550-780, gnl|Hg17|chr1 (150532826-150533067)
               

               
               550-780, gnl|Mm7|chr3 (90545979-90545755)

Aligned organism(s): 16 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               17-269, gnl|bosTau2|chr3 (7953575-7953825)
               

               
               17-269, gnl|canFam2|chr7 (46338568-46338393)
               

               
               17-269, gnl|echTel1|scaffold_276475 (6009-5735)
               

               
               17-269, gnl|hg17|chr1 (150514014-150514285)
               

               
               17-269, gnl|Hg17|chr1 (150514076-150514333)
               

               
               17-269, gnl|loxAfr1|scaffold_2219 (70838-71073)
               

               
               17-269, gnl|mm7|chr3 (90563839-90563589)
               

               
               17-269, gnl|Mm7|chr3 (90563792-90563539)
               

               
               17-269, gnl|monDom2|scaffold_59 (4340394-4340118)
               

               
               17-269, gnl|oryCun1|scaffold_175331 (60049-60316)
               

               
               17-269, gnl|panTro1|chr1 (132494582-132494853)
               

               
               17-269, gnl|rheMac2|chr1 (132239009-132239283)
               

               
               17-269, gnl|rn3|chr2 (182652018-182651768)
               


               
               550-780, gnl|bosTau2|chr3 (7970087-7970327)
               

               
               550-780, gnl|Hg17|chr1 (150532826-150533067)
               

               
               550-780, gnl|Mm7|chr3 (90545979-90545755)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cki (0.165235)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cki (0.165235)

	17-269, + strand, RNAz p=0.996848
	87-269, - strand, RNAz p=0.99375

	17-269, gnl\|bosTau2\|chr3 (7953575-7953825)
	17-269, gnl\|canFam2\|chr7 (46338568-46338393)
	17-269, gnl\|echTel1\|scaffold_276475 (6009-5735)
	17-269, gnl\|hg17\|chr1 (150514014-150514285)
	17-269, gnl\|Hg17\|chr1 (150514076-150514333)
	17-269, gnl\|loxAfr1\|scaffold_2219 (70838-71073)
	17-269, gnl\|mm7\|chr3 (90563839-90563589)
	17-269, gnl\|Mm7\|chr3 (90563792-90563539)
	17-269, gnl\|monDom2\|scaffold_59 (4340394-4340118)
	17-269, gnl\|oryCun1\|scaffold_175331 (60049-60316)
	17-269, gnl\|panTro1\|chr1 (132494582-132494853)
	17-269, gnl\|rheMac2\|chr1 (132239009-132239283)
	17-269, gnl\|rn3\|chr2 (182652018-182651768)

	550-780, gnl\|bosTau2\|chr3 (7970087-7970327)
	550-780, gnl\|Hg17\|chr1 (150532826-150533067)
	550-780, gnl\|Mm7\|chr3 (90545979-90545755)