Non-Coding RNA Search

Ss1.1-Pig4-TMW8001C21.5

Sequence:


               
               AACTAATACACAGAGAAATGAAACCCCGGTAGAGGAACTTGGTGAGGTTTCTGAACAAAA
AATCACTGCTAAGGGAACACCAAATAAAGTCGACAAGGTGAGGAGCTGTGCTGAGAGCTG
TTCAAGTGCCCAAGGCACATCCTCCCTGGACGAATCTCAAAGGTCTCATCCTGAGTCCAG
CTCTCATCCTTTCAATCCTGAAACTTTGCATGCAGAGGCAACCAGGTCAGTTCCACAGGG
TTCTGAAGAAAACAAGCTCAAGAGGACATCTTGCATGTATGGGGCAAACTGCTACAGGAA
GAATCCTGTCCATTTTCAACACTTCAGTCACCCTGGTGATAGTGATTATGGAGATGTACA
TGTCACGTGTCAAGATGAGGCTGATGAGCGGCCTGAATGTCCTTATGGAGCATCTTGTTA
TCGGAAGAATCCCCAGCACAAGATCGAATATAGACATAGTACATTTCCAGTGAGAAGCAT
TTCAGACGAAGATGACAGTGTTGGGCAACCCAATGAGTATGACCTGAATGACAGCTTTAT
AGATGATGAGGAAGAGGAATACGAGCCAACAGATGAAGATTCCGACTGGGAACCAGGAAA
GGAAGACCTAGAGAAGGAAGATACGGAAGAGCTTTTAAAAGAAGCAAAAAAGTTTATAAA
AAGAAAAAAGTAACTCTTCTCTGCATAGTATATGGCTCATATATAATCTTTTCTTAGTGG
AAAAATAATTCAGGAACTAAGGAAGCACTTAAATGATCACTGTTTTCCTTCTTCTTATAA
CTTTACTGTTGACCCTTTGCAAATGAAACACTGAAAAAAGTCAGCCATCAGTGTAGTAAA
TGGAATTTGTTTCATTGCTTTCCTTTTCCATCCTATTTAAAACATCTGGAAATGGTAAGA
GAGTTATAAAGAAAAATAATTGATATTTTTCATATACTTTGTGTGTTAGTAATAAAAAGT
AAAAGCAATAGGAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AACTAATACACAGAGAAATGAAACCCCGGTAGAGGAACTTGGTGAGGTTTCTGAACAAAA
AATCACTGCTAAGGGAACACCAAATAAAGTCGACAAGGTGAGGAGCTGTGCTGAGAGCTG
TTCAAGTGCCCAAGGCACATCCTCCCTGGACGAATCTCAAAGGTCTCATCCTGAGTCCAG
CTCTCATCCTTTCAATCCTGAAACTTTGCATGCAGAGGCAACCAGGTCAGTTCCACAGGG
TTCTGAAGAAAACAAGCTCAAGAGGACATCTTGCATGTATGGGGCAAACTGCTACAGGAA
GAATCCTGTCCATTTTCAACACTTCAGTCACCCTGGTGATAGTGATTATGGAGATGTACA
TGTCACGTGTCAAGATGAGGCTGATGAGCGGCCTGAATGTCCTTATGGAGCATCTTGTTA
TCGGAAGAATCCCCAGCACAAGATCGAATATAGACATAGTACATTTCCAGTGAGAAGCAT
TTCAGACGAAGATGACAGTGTTGGGCAACCCAATGAGTATGACCTGAATGACAGCTTTAT
AGATGATGAGGAAGAGGAATACGAGCCAACAGATGAAGATTCCGACTGGGAACCAGGAAA
GGAAGACCTAGAGAAGGAAGATACGGAAGAGCTTTTAAAAGAAGCAAAAAAGTTTATAAA
AAGAAAAAAGTAACTCTTCTCTGCATAGTATATGGCTCATATATAATCTTTTCTTAGTGG
AAAAATAATTCAGGAACTAAGGAAGCACTTAAATGATCACTGTTTTCCTTCTTCTTATAA
CTTTACTGTTGACCCTTTGCAAATGAAACACTGAAAAAAGTCAGCCATCAGTGTAGTAAA
TGGAATTTGTTTCATTGCTTTCCTTTTCCATCCTATTTAAAACATCTGGAAATGGTAAGA
GAGTTATAAAGAAAAATAATTGATATTTTTCATATACTTTGTGTGTTAGTAATAAAAAGT
AAAAGCAATAGGAAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               Q53QU0_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q53QU0_HUMAN

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               464-984, gnl|bosTau2|chr14 (43239082-43239588)
               

               
               464-984, gnl|Hg17|chr2 (68716596-68717124)
               

               
               464-984, gnl|Mm7|chr6 (87705282-87704837)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               464-984, gnl|bosTau2|chr14 (43239082-43239588)
               

               
               464-984, gnl|Hg17|chr2 (68716596-68717124)
               

               
               464-984, gnl|Mm7|chr6 (87705282-87704837)

Expressed library(ies): 13 entry(ies)

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Expressed library(ies): 13 entry(ies)

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               tra (0.369276)
               

               
               liv (0.292569)
               

               
               sag (0.182715)
               

               
               sin (0.174948)
               

               
               rec (0.17307)
               

               
               eye (0.170503)
               

               
               lin (0.145603)
               

               
               lnt (0.142308)
               

               
               lyg (0.133103)
               

               
               ret (0.128733)
               

               
               cbl (0.114797)
               

               
               jca (0.11396)
               

               
               cty (0.10408)

Expressed library(ies): 13 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tra (0.369276)
               

               
               liv (0.292569)
               

               
               sag (0.182715)
               

               
               sin (0.174948)
               

               
               rec (0.17307)
               

               
               eye (0.170503)
               

               
               lin (0.145603)
               

               
               lnt (0.142308)
               

               
               lyg (0.133103)
               

               
               ret (0.128733)
               

               
               cbl (0.114797)
               

               
               jca (0.11396)
               

               
               cty (0.10408)

	464-984, gnl\|bosTau2\|chr14 (43239082-43239588)
	464-984, gnl\|Hg17\|chr2 (68716596-68717124)
	464-984, gnl\|Mm7\|chr6 (87705282-87704837)

	tra (0.369276)
	liv (0.292569)
	sag (0.182715)
	sin (0.174948)
	rec (0.17307)
	eye (0.170503)
	lin (0.145603)
	lnt (0.142308)
	lyg (0.133103)
	ret (0.128733)
	cbl (0.114797)
	jca (0.11396)
	cty (0.10408)