Non-Coding RNA Search

Ss1.1-Pig4-TMW8001D01.5

Sequence:


               
               TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTACATCTCACCTTTTAATGACC
CGACTCAGTGCAGCACACTGCGGAAGGCAGCCATGTGGCCCCGCACACTGTCCGTGATCT
GCTGGGCCGACCTGGCCCTGCCGTAGTAGTCGGTGAAGAGGCCGTCGGGGCTGAGCAGGT
AGATGGCGATGGAATGGTCCACGATGTAATCCTGGTCCTCGTCCTTGGGGCCAGCGCTGT
AGTATACTCGGTAGCTGCGGCTCACCTGGGCGATCTGCTCAGCAGAGCCCGTCAGGCCCA
GCAGCCTTGGGTGGAAGTCCTGCACGTAGCGGGCCATGGCCGCGACATCGTCCCTCTCAG
GGTCCACAGTAATGAAGAGGGGCTGCACCGGGGGCAGGCCAGGCTCCGCCTCCAGCTGCC
GCACCACCTGCACCAGCTTCTCCAGCTCATCGGGGCAGATGTCCGGGCAGTGAGTGAAGC
CAAAGTATATCAGCACCCACTGGCCCCGAAAGTCAGCTTTGCAGCGAACTTGGCCTCGGT
GATCCAGAAGACTGAAGTCGCCTTGGCCCACAGCGGCCCGGCGCAGGGCCTCTGTCCGCT
GTTGCTGCCGCCACTGCTCCTTCTCCGCCCTCAAGGCCAGCCAGGCTCCACCCAGCCCAG
CCCCAATCAAGGCTGTGATCAGCAACCTAGTTTGCAGCCGAGGGCCCCGGGGCTGGCCTG
GCTTGCCGGTTTCTGCAGGGCCCTGCCTTGCTAAGAGCCGGTATCTCACCTGCCCGGCCT
CAGCTCCCTGGATCCTAGGGAGGGCCAGAGGCCTGAGCGGAAAGAGCCCGTGCCAAGCCT
TGGGTGCCCGAGCCAGCATGGACCTGATGCTCCCGCGGGCTCCACGCCCCCTCCAGTCCT
TCGCTCGTTGAACCTGCCGGGCCCGCAGCCACCCTGTTCGACTGCTGCTACTGGGAGGAT
CTCTCGAAGACTTCTGAACGTCCGGCCTGCGCCCGGTCCGACGGTTCCTGGACTTGGGAG
GGCTGGATGACCTTGGTCACGTCTCGTAACCTGTCTGTACCAGCTTTCTCCTTTACAAAA
TGCGCTCTAAGCGATGTACGAGATGGGCCTGCAAATGCAGCCAGCTTGTAGACGTTTGCA
GGGCGCCGGCACAGGCGGATCTCCCGGGCCCCCAGCGCGCCGCACCGTCCGGCGAGTCTG
ATCTATGTTTGCAATAAACTTCTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTACATCTCACCTTTTAATGACC
CGACTCAGTGCAGCACACTGCGGAAGGCAGCCATGTGGCCCCGCACACTGTCCGTGATCT
GCTGGGCCGACCTGGCCCTGCCGTAGTAGTCGGTGAAGAGGCCGTCGGGGCTGAGCAGGT
AGATGGCGATGGAATGGTCCACGATGTAATCCTGGTCCTCGTCCTTGGGGCCAGCGCTGT
AGTATACTCGGTAGCTGCGGCTCACCTGGGCGATCTGCTCAGCAGAGCCCGTCAGGCCCA
GCAGCCTTGGGTGGAAGTCCTGCACGTAGCGGGCCATGGCCGCGACATCGTCCCTCTCAG
GGTCCACAGTAATGAAGAGGGGCTGCACCGGGGGCAGGCCAGGCTCCGCCTCCAGCTGCC
GCACCACCTGCACCAGCTTCTCCAGCTCATCGGGGCAGATGTCCGGGCAGTGAGTGAAGC
CAAAGTATATCAGCACCCACTGGCCCCGAAAGTCAGCTTTGCAGCGAACTTGGCCTCGGT
GATCCAGAAGACTGAAGTCGCCTTGGCCCACAGCGGCCCGGCGCAGGGCCTCTGTCCGCT
GTTGCTGCCGCCACTGCTCCTTCTCCGCCCTCAAGGCCAGCCAGGCTCCACCCAGCCCAG
CCCCAATCAAGGCTGTGATCAGCAACCTAGTTTGCAGCCGAGGGCCCCGGGGCTGGCCTG
GCTTGCCGGTTTCTGCAGGGCCCTGCCTTGCTAAGAGCCGGTATCTCACCTGCCCGGCCT
CAGCTCCCTGGATCCTAGGGAGGGCCAGAGGCCTGAGCGGAAAGAGCCCGTGCCAAGCCT
TGGGTGCCCGAGCCAGCATGGACCTGATGCTCCCGCGGGCTCCACGCCCCCTCCAGTCCT
TCGCTCGTTGAACCTGCCGGGCCCGCAGCCACCCTGTTCGACTGCTGCTACTGGGAGGAT
CTCTCGAAGACTTCTGAACGTCCGGCCTGCGCCCGGTCCGACGGTTCCTGGACTTGGGAG
GGCTGGATGACCTTGGTCACGTCTCGTAACCTGTCTGTACCAGCTTTCTCCTTTACAAAA
TGCGCTCTAAGCGATGTACGAGATGGGCCTGCAAATGCAGCCAGCTTGTAGACGTTTGCA
GGGCGCCGGCACAGGCGGATCTCCCGGGCCCCCAGCGCGCCGCACCGTCCGGCGAGTCTG
ATCTATGTTTGCAATAAACTTCTA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|55661581|ref|XP_515223.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|55661581|ref|XP_515223.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               548-747, - strand, RNAz p=0.973826

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               548-747, - strand, RNAz p=0.973826

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               48-858, gnl|bosTau2|chr5 (75768193-75767383)
               

               
               48-858, gnl|Hg17|chr22 (49252151-49252977)
               

               
               48-858, gnl|Mm7|chr15 (89454525-89455323)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               48-858, gnl|bosTau2|chr5 (75768193-75767383)
               

               
               48-858, gnl|Hg17|chr22 (49252151-49252977)
               

               
               48-858, gnl|Mm7|chr15 (89454525-89455323)

Expressed library(ies): 6 entry(ies)

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Expressed library(ies): 6 entry(ies)

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               nlu (0.383362)
               

               
               col (0.195008)
               

               
               pty (0.142714)
               

               
               lnt (0.142308)
               

               
               cly (0.120642)
               

               
               eru (0.120048)

Expressed library(ies): 6 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nlu (0.383362)
               

               
               col (0.195008)
               

               
               pty (0.142714)
               

               
               lnt (0.142308)
               

               
               cly (0.120642)
               

               
               eru (0.120048)

	48-858, gnl\|bosTau2\|chr5 (75768193-75767383)
	48-858, gnl\|Hg17\|chr22 (49252151-49252977)
	48-858, gnl\|Mm7\|chr15 (89454525-89455323)

	nlu (0.383362)
	col (0.195008)
	pty (0.142714)
	lnt (0.142308)
	cly (0.120642)
	eru (0.120048)