Non-Coding RNA Search

Ss1.1-Pig4-TMW8001D17.3

Sequence:


               
               TTTTAAAGCAACCCACTAAATCAAGTTCATGTTAAAGGGATACCACTAAGACATTTCTGT
ACATCTTTTGCTGAAAACTTAAATGCCTTACTCCATTTATCAAGTTGACATGTTTTTAAT
TCACATGAGGTATCTTGAAGTCTAATATATACTGTATTACAAAGACTTGTTCTAATATTT
TTAAATGTTTATGCAAAAAATATATATTATAGAACTTTTCTTTAAAGTTAAAATACAGTA
CTATTTAAAGCTGAAAGGTTAAAAAAAAACATTGTCACCTTATATGTCTTCTTCCACTGT
GACTTTTTAGCTGCAGACTGGTACATTTCATTGCCTTTAAGTTAGAAGCTGCCTACTGCT
TTTGTTGTTTTATTTTAACCAACAGAGCACAGCGGCACTGCAAACTCTGGGAATTGACTT
GGATAAAAATATCAGGATGTAGCTGTTTTAGATACTTTAATTTTGCTTCTTTTATGTTTT
GGGTATTTGATTTTGAAAAGTCAGAATATGAAACAAATTCTCAGATTGAACTACTTCTTG
GACCTGGCTTGAAGAATGTTTCAGTGTCTCATTCACAGTAGGTTCGTAAGCTGCTCATTT
TTGAACAGCTGTTTGCATGGAATAGAAGCATGTCCATTTGACCACATCAGTTTATGCAAA
AGCATACGTTTTTTAAATAAGATAAATGTTAAGTTGGTTTATAAGTGAGCCTGTTAATTG
AACTACAGATACTGCATATAATCCCACATCCCTTGACCAATAAAAGTTGCTGGAGAACCA
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTAAAGCAACCCACTAAATCAAGTTCATGTTAAAGGGATACCACTAAGACATTTCTGT
ACATCTTTTGCTGAAAACTTAAATGCCTTACTCCATTTATCAAGTTGACATGTTTTTAAT
TCACATGAGGTATCTTGAAGTCTAATATATACTGTATTACAAAGACTTGTTCTAATATTT
TTAAATGTTTATGCAAAAAATATATATTATAGAACTTTTCTTTAAAGTTAAAATACAGTA
CTATTTAAAGCTGAAAGGTTAAAAAAAAACATTGTCACCTTATATGTCTTCTTCCACTGT
GACTTTTTAGCTGCAGACTGGTACATTTCATTGCCTTTAAGTTAGAAGCTGCCTACTGCT
TTTGTTGTTTTATTTTAACCAACAGAGCACAGCGGCACTGCAAACTCTGGGAATTGACTT
GGATAAAAATATCAGGATGTAGCTGTTTTAGATACTTTAATTTTGCTTCTTTTATGTTTT
GGGTATTTGATTTTGAAAAGTCAGAATATGAAACAAATTCTCAGATTGAACTACTTCTTG
GACCTGGCTTGAAGAATGTTTCAGTGTCTCATTCACAGTAGGTTCGTAAGCTGCTCATTT
TTGAACAGCTGTTTGCATGGAATAGAAGCATGTCCATTTGACCACATCAGTTTATGCAAA
AGCATACGTTTTTTAAATAAGATAAATGTTAAGTTGGTTTATAAGTGAGCCTGTTAATTG
AACTACAGATACTGCATATAATCCCACATCCCTTGACCAATAAAAGTTGCTGGAGAACCA
AAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               510-704, - strand, RNAz p=0.816915

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               510-704, - strand, RNAz p=0.816915

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               1-782, gnl|bosTau2|chr28 (586862-586105)
               

               
               1-782, gnl|Hg17|chr1 (225747205-225747986)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-782, gnl|bosTau2|chr28 (586862-586105)
               

               
               1-782, gnl|Hg17|chr1 (225747205-225747986)

Expressed library(ies): 10 entry(ies)

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Expressed library(ies): 10 entry(ies)

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               fco (0.628832)
               

               
               cbe (0.239234)
               

               
               fbs (0.175346)
               

               
               rec (0.17307)
               

               
               lun (0.150489)
               

               
               bfe (0.149858)
               

               
               fat (0.147427)
               

               
               lnt (0.142308)
               

               
               kid (0.129735)
               

               
               ret (0.128733)

Expressed library(ies): 10 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fco (0.628832)
               

               
               cbe (0.239234)
               

               
               fbs (0.175346)
               

               
               rec (0.17307)
               

               
               lun (0.150489)
               

               
               bfe (0.149858)
               

               
               fat (0.147427)
               

               
               lnt (0.142308)
               

               
               kid (0.129735)
               

               
               ret (0.128733)

	1-782, gnl\|bosTau2\|chr28 (586862-586105)
	1-782, gnl\|Hg17\|chr1 (225747205-225747986)

	fco (0.628832)
	cbe (0.239234)
	fbs (0.175346)
	rec (0.17307)
	lun (0.150489)
	bfe (0.149858)
	fat (0.147427)
	lnt (0.142308)
	kid (0.129735)
	ret (0.128733)