Non-Coding RNA Search

Ss1.1-Pig4-TMW8001E17.3

Sequence:


               
               GGAAATATCAATGTCGAATGCCATAAAAGAATGTAATGTGTATATATCCAATGACCCCTT
AGGGAATGCCAGCGTTCTGGTTCACTCACCACATTTCTGACAACCTGTCCAGATCGGAAT
AACTGTGATGTGGTACTTCCGGTGTTTTTGTCAGTGACACGCGGTTGACTGTGCCCTGTG
GCTCTTGAGTTGCACAGTTAGGTGATAAATGGTTGCACAGTTAGGTAATTTCCTAATGGG
GGGTGAGCAAAAGGCGACTTGCCATTGATATGTAATGTTTGATCACATATTGTCTTACTT
TACATAAAAGAGCAGAGGGGGACAATGTGAAAGAAAAATGTGCATCAGTGGTTGTCTGTT
TCTACTAAAACCAGAAGATTGGTATGAGTACTTAAACCTCACTGTGAAATAATTCTATAT
TTTGCAAATTATTCCCTCCACTACCCAGTGTTTTCTGTCCTTGTTGTGATTAAATCTTAT
CTTTTAGTTAGTCATTGCAGTATTTCTTTGAAATGTTTTTGTTTTAAACTTAGGGCTAGG
CTCCTTTATTTGTTCAGTTGTTTTCAACTACTTGGGGTATTTTCCTTTCCTGATATTTAT
GAAGTAGATGTTTATCACTAAATGTAGTGCTTTGGTTTACATTAATGATTTTGTGTGTGG
TCTGAAACACAGTCACTTAGAGCGTGTGCACGATCTCGTTATGTTAACCGTGGTTATGGA
GTCGTTGGCTGTGGGGTGCCGGGGAGGCCACTGCAACGGTGCTAAGGCTAACAGGGAATC
TTCTGTTGAGGGCCTTAAGCCCCTGAGGGTCCTGAAGACTCAGGGAATCTGTCATAGTCC
AGGGATCCTTGCACCCCACCCCATCCCGTTTATGTTTGGCCTCCACTGAGCCAGGCCTGC
CCTTGTCCCAACAGCCGAAGAGGGACACAGGGATTTCAATGAGCGGATCTTTGTTTATGT
TCAGATGAGTAAATGTCCAGACCACTTAAAATACAGCTGCTTTTCTGGCGGTCTTATCCG
TGGGGCCGAAACTTAATAAACCACAGGAAATGGACTGTCATTCTTAGTTTGCTGCCAGGG
CTTGCTTCAGATTCCAGGCCTATTGGCATTTGGGAGCGGTGAAGTCGTTTGCTCTTATTT
GCAGCCTTGCACTTATCTTGCAGCTCTTGTGCGCCTAGGTGTTGCATTGGTAGAACAATT
GCATTTCTTAGCTCTTGCTTTTCCACAGCAGTGTAATAAAGTGAATCCCTTGAAAGTCTG
GAAAAGTCCTCTGTTTCTTCCCACCACCTACCCTTTCAACTGCAAAAAATCACTGAAAAT
GCTTAATGCCTGAATCCATGTAAAAACAGTTTCACTGGAAAGCCTTTCAGTGGGAAATGA
ATAAATGTCATACATTGTTATGTTCAGTGATCTCAATAAACCCACTTACTAATGGAAAAA
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGAAATATCAATGTCGAATGCCATAAAAGAATGTAATGTGTATATATCCAATGACCCCTT
AGGGAATGCCAGCGTTCTGGTTCACTCACCACATTTCTGACAACCTGTCCAGATCGGAAT
AACTGTGATGTGGTACTTCCGGTGTTTTTGTCAGTGACACGCGGTTGACTGTGCCCTGTG
GCTCTTGAGTTGCACAGTTAGGTGATAAATGGTTGCACAGTTAGGTAATTTCCTAATGGG
GGGTGAGCAAAAGGCGACTTGCCATTGATATGTAATGTTTGATCACATATTGTCTTACTT
TACATAAAAGAGCAGAGGGGGACAATGTGAAAGAAAAATGTGCATCAGTGGTTGTCTGTT
TCTACTAAAACCAGAAGATTGGTATGAGTACTTAAACCTCACTGTGAAATAATTCTATAT
TTTGCAAATTATTCCCTCCACTACCCAGTGTTTTCTGTCCTTGTTGTGATTAAATCTTAT
CTTTTAGTTAGTCATTGCAGTATTTCTTTGAAATGTTTTTGTTTTAAACTTAGGGCTAGG
CTCCTTTATTTGTTCAGTTGTTTTCAACTACTTGGGGTATTTTCCTTTCCTGATATTTAT
GAAGTAGATGTTTATCACTAAATGTAGTGCTTTGGTTTACATTAATGATTTTGTGTGTGG
TCTGAAACACAGTCACTTAGAGCGTGTGCACGATCTCGTTATGTTAACCGTGGTTATGGA
GTCGTTGGCTGTGGGGTGCCGGGGAGGCCACTGCAACGGTGCTAAGGCTAACAGGGAATC
TTCTGTTGAGGGCCTTAAGCCCCTGAGGGTCCTGAAGACTCAGGGAATCTGTCATAGTCC
AGGGATCCTTGCACCCCACCCCATCCCGTTTATGTTTGGCCTCCACTGAGCCAGGCCTGC
CCTTGTCCCAACAGCCGAAGAGGGACACAGGGATTTCAATGAGCGGATCTTTGTTTATGT
TCAGATGAGTAAATGTCCAGACCACTTAAAATACAGCTGCTTTTCTGGCGGTCTTATCCG
TGGGGCCGAAACTTAATAAACCACAGGAAATGGACTGTCATTCTTAGTTTGCTGCCAGGG
CTTGCTTCAGATTCCAGGCCTATTGGCATTTGGGAGCGGTGAAGTCGTTTGCTCTTATTT
GCAGCCTTGCACTTATCTTGCAGCTCTTGTGCGCCTAGGTGTTGCATTGGTAGAACAATT
GCATTTCTTAGCTCTTGCTTTTCCACAGCAGTGTAATAAAGTGAATCCCTTGAAAGTCTG
GAAAAGTCCTCTGTTTCTTCCCACCACCTACCCTTTCAACTGCAAAAAATCACTGAAAAT
GCTTAATGCCTGAATCCATGTAAAAACAGTTTCACTGGAAAGCCTTTCAGTGGGAAATGA
ATAAATGTCATACATTGTTATGTTCAGTGATCTCAATAAACCCACTTACTAATGGAAAAA
AAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               708-825, - strand, RNAz p=0.61717

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               708-825, - strand, RNAz p=0.61717

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1436, gnl|bosTau2|chr4 (38473854-38472459)
               

               
               1-1436, gnl|Hg17|chr7 (28767631-28766219)
               

               
               1-1436, gnl|Mm7|chr6 (53780376-53778838)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1436, gnl|bosTau2|chr4 (38473854-38472459)
               

               
               1-1436, gnl|Hg17|chr7 (28767631-28766219)
               

               
               1-1436, gnl|Mm7|chr6 (53780376-53778838)

Expressed library(ies): 6 entry(ies)

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Expressed library(ies): 6 entry(ies)

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               sin (0.349895)
               

               
               fbs (0.175346)
               

               
               rec (0.17307)
               

               
               csk (0.140746)
               

               
               tra (0.123092)
               

               
               eep (0.122564)

Expressed library(ies): 6 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sin (0.349895)
               

               
               fbs (0.175346)
               

               
               rec (0.17307)
               

               
               csk (0.140746)
               

               
               tra (0.123092)
               

               
               eep (0.122564)

	1-1436, gnl\|bosTau2\|chr4 (38473854-38472459)
	1-1436, gnl\|Hg17\|chr7 (28767631-28766219)
	1-1436, gnl\|Mm7\|chr6 (53780376-53778838)

	sin (0.349895)
	fbs (0.175346)
	rec (0.17307)
	csk (0.140746)
	tra (0.123092)
	eep (0.122564)