Non-Coding RNA Search

Ss1.1-Pig4-TMW8001H11.5

Sequence:


               
               CTTTTTCCTAAACTTATGTTGTTTCAACTTGCACAAAGGAAGTCTCTTCTTGGAGTTGCT
CCTACACCCAGCTTCTTTGTTGTTGCTTTTGTGTGTGGATTTTTTTTTCCCCCAAGTTTT
TCTGCTCACTCACCTCGCAGGATAACTGCAGAAAGTTTAATGATACCCCGAAGTACTGCA
CTCGGGAAGAAAAAAAGGAGAGCCTTTTAAGGGCCAAATCATGGAGGGAATATAAAGAAA
CAAACCTCTTTATATAGCCTTAGAGTCTGAAACTCTTCAGTTGTTAGAGCCAATACAAAA
AGACCCTGCAATTCCCTATTTTTCTCCCCACTGGGTGCATGCATCACCTGCTAGTGAGGA
TTGCATATGGTAGAAGGAGATTGCTGCAACAGCCTGAGATGTCACCACACCAAGAGGAAA
GAAGCATTGAAATGCCTTTACCTTTTCCTAAACCCACAGTGCATGAAGTGTAGCAGAAGG
ATGACCACAGTGAGATAGGACAGAGCATGTTCAGGCTGACTTTGGCAATGAGAACAGACA
AATTCACTTTTCTCGACAAGAGCAGTGGTTAATGGCCTGTCCTTTAGTGTCTAAGAGAAA
CTGCAGAGCAGCTCTGTGACTTACTTTACAAAATATGCTACCTCAAAGTGCTACCGATAA
ACCTTTCTAACTGTAAGTGCTCTTGCTAAGGGCACATGTCTTAATCAAAGTTTAGGTTTT
TTGGATTTTGGTTTTTTTTTTTTTTTTTTTTGTATATTGATGAATGAGATCTTACCTATT
AAATATATTATTGGATCATGGTTCCTCAAGGTTATTAAAGTTTGTGTGTGTGTGTTTTTT
ACGACAAATATCTTTTATGTGTGTTTTTTAGAATTTGGATCTTTAAAGATTTGGAGAGGA
TATGTAAGTTCTAAGGCACTCAGTTTTTCTGATTTATATGTTAATGATCAGGGCCTAAGT
TAAATAAATAAAAATATGTGTGCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTTTTTCCTAAACTTATGTTGTTTCAACTTGCACAAAGGAAGTCTCTTCTTGGAGTTGCT
CCTACACCCAGCTTCTTTGTTGTTGCTTTTGTGTGTGGATTTTTTTTTCCCCCAAGTTTT
TCTGCTCACTCACCTCGCAGGATAACTGCAGAAAGTTTAATGATACCCCGAAGTACTGCA
CTCGGGAAGAAAAAAAGGAGAGCCTTTTAAGGGCCAAATCATGGAGGGAATATAAAGAAA
CAAACCTCTTTATATAGCCTTAGAGTCTGAAACTCTTCAGTTGTTAGAGCCAATACAAAA
AGACCCTGCAATTCCCTATTTTTCTCCCCACTGGGTGCATGCATCACCTGCTAGTGAGGA
TTGCATATGGTAGAAGGAGATTGCTGCAACAGCCTGAGATGTCACCACACCAAGAGGAAA
GAAGCATTGAAATGCCTTTACCTTTTCCTAAACCCACAGTGCATGAAGTGTAGCAGAAGG
ATGACCACAGTGAGATAGGACAGAGCATGTTCAGGCTGACTTTGGCAATGAGAACAGACA
AATTCACTTTTCTCGACAAGAGCAGTGGTTAATGGCCTGTCCTTTAGTGTCTAAGAGAAA
CTGCAGAGCAGCTCTGTGACTTACTTTACAAAATATGCTACCTCAAAGTGCTACCGATAA
ACCTTTCTAACTGTAAGTGCTCTTGCTAAGGGCACATGTCTTAATCAAAGTTTAGGTTTT
TTGGATTTTGGTTTTTTTTTTTTTTTTTTTTGTATATTGATGAATGAGATCTTACCTATT
AAATATATTATTGGATCATGGTTCCTCAAGGTTATTAAAGTTTGTGTGTGTGTGTTTTTT
ACGACAAATATCTTTTATGTGTGTTTTTTAGAATTTGGATCTTTAAAGATTTGGAGAGGA
TATGTAAGTTCTAAGGCACTCAGTTTTTCTGATTTATATGTTAATGATCAGGGCCTAAGT
TAAATAAATAAAAATATGTGTGCA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               93-984, gnl|bosTau2|chr8 (22622338-22621451)
               

               
               93-984, gnl|Hg17|chr9 (71528760-71527824)
               

               
               93-984, gnl|Mm7|chr19 (21555551-21556451)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               93-984, gnl|bosTau2|chr8 (22622338-22621451)
               

               
               93-984, gnl|Hg17|chr9 (71528760-71527824)
               

               
               93-984, gnl|Mm7|chr19 (21555551-21556451)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               jej (0.197844)
               

               
               cmu (0.186393)
               

               
               fhi (0.169578)

Expressed library(ies): 3 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               jej (0.197844)
               

               
               cmu (0.186393)
               

               
               fhi (0.169578)

	93-984, gnl\|bosTau2\|chr8 (22622338-22621451)
	93-984, gnl\|Hg17\|chr9 (71528760-71527824)
	93-984, gnl\|Mm7\|chr19 (21555551-21556451)