Ss1.1-Pig4-TMW8001I06.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCAAGGCCCTGGGTGCCTACAAACTGGCCCGGCATGCCTACGACAAGCTGCAAGGCCTGC AGATCCCCACCAGGTTCCAGAAGTCCATCGAGCTGGGCAGCCTAACCATCCGCTCCAAGC CCTTCCATGACAGCGAGGAGCTGGTGCCCTTGTGCTACCGCTGCTCCACCAACAACCCAC TGCTAAACAACCTGGGCAACGTCTGCATCAATTGCCGCCAGCCCTTTGTCTTCTCTGCCT CCTCCTACGAGGTGCTGCACCTGGTGGAATTCTACCTGGAGGAGGGCATCACTGATGAGG AAGCTGTCTCCCTCATCGACCTGGAGGCACCGAGACACAAGCGTGAGAACAAGTGGCAAG AGATCAGGAGCAATGATTCCCAGACTTTGAGGCTGGACGAGACCGTGGACCCCATGGGAG ATGATGACCCTTTCACAGCAAAGCTGAGCTTCGAGCAAGGTGGCTCAGAGTTCGTGCCTG TGGTAGTGAACCGCTCCGTGCTGCGTTCCATGAGCCGGCGGGACGTCCTCATCAAGCGCT GGCCACCACCCCTGCAATGGCAGTACTTCCGCTCACTCCTCCCTGACGCCTCCATCACCA TGTGTCCTTCATGCTTCCAGATGTTCCACTCGGAGGACTACGAGCTGCTGGTGCTTCAGC ACACCTGCTGCCCCTACTGCCGGAGGCGCATCGACGACTCCAGCCCCTGACCAGCACCCT CAGGACCACTGCTCCCTCCCGGCTGCCTTGCAGTCAGCTGGGCTATTGAAGGAAGAGTTA AACTGTCAGAATGTGTCTTCTGCCCAGATCACGTTTGTATTTTAGGGAGGGGCCTTGTGT AACCACAGAATTCCTATTTATGGCATTTCGTGCCTTGTAAATAGCACCAGGAGATGGAGA AGAGAATGTACATATATTTTCTAAGAAAAAAAAATCTGTTACTTTCAAAACGACTCTGAG TTGTTCATGGCAGCCTGCTGGAGTCCACAGATCTGTCAGACCATTAACATGTACACTTTG TGAACAGATTGCCTCAATAATTACAAATAAAAGGGCTACTTATTTTCAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCAAGGCCCTGGGTGCCTACAAACTGGCCCGGCATGCCTACGACAAGCTGCAAGGCCTGC AGATCCCCACCAGGTTCCAGAAGTCCATCGAGCTGGGCAGCCTAACCATCCGCTCCAAGC CCTTCCATGACAGCGAGGAGCTGGTGCCCTTGTGCTACCGCTGCTCCACCAACAACCCAC TGCTAAACAACCTGGGCAACGTCTGCATCAATTGCCGCCAGCCCTTTGTCTTCTCTGCCT CCTCCTACGAGGTGCTGCACCTGGTGGAATTCTACCTGGAGGAGGGCATCACTGATGAGG AAGCTGTCTCCCTCATCGACCTGGAGGCACCGAGACACAAGCGTGAGAACAAGTGGCAAG AGATCAGGAGCAATGATTCCCAGACTTTGAGGCTGGACGAGACCGTGGACCCCATGGGAG ATGATGACCCTTTCACAGCAAAGCTGAGCTTCGAGCAAGGTGGCTCAGAGTTCGTGCCTG TGGTAGTGAACCGCTCCGTGCTGCGTTCCATGAGCCGGCGGGACGTCCTCATCAAGCGCT GGCCACCACCCCTGCAATGGCAGTACTTCCGCTCACTCCTCCCTGACGCCTCCATCACCA TGTGTCCTTCATGCTTCCAGATGTTCCACTCGGAGGACTACGAGCTGCTGGTGCTTCAGC ACACCTGCTGCCCCTACTGCCGGAGGCGCATCGACGACTCCAGCCCCTGACCAGCACCCT CAGGACCACTGCTCCCTCCCGGCTGCCTTGCAGTCAGCTGGGCTATTGAAGGAAGAGTTA AACTGTCAGAATGTGTCTTCTGCCCAGATCACGTTTGTATTTTAGGGAGGGGCCTTGTGT AACCACAGAATTCCTATTTATGGCATTTCGTGCCTTGTAAATAGCACCAGGAGATGGAGA AGAGAATGTACATATATTTTCTAAGAAAAAAAAATCTGTTACTTTCAAAACGACTCTGAG TTGTTCATGGCAGCCTGCTGGAGTCCACAGATCTGTCAGACCATTAACATGTACACTTTG TGAACAGATTGCCTCAATAATTACAAATAAAAGGGCTACTTATTTTCAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 37 entry(ies) | More info |
| Aligned organism(s): 37 entry(ies) | Help | Less info |
| 1-138, gnl|bosTau2|chr8 (40855712-40855849) | |
| 1-138, gnl|canFam2|chr20 (8652803-8652627) | |
| 1-138, gnl|danRer3|chrNA (191350054-191349885) | |
| 1-138, gnl|echTel1|scaffold_313045 (67781-67605) | |
| 1-138, gnl|fr1|chrUn (73085100-73085273) | |
| 1-138, gnl|galGal2|chr12 (19423106-19423282) | |
| 1-138, gnl|hg17|chr3 (130715927-130716103) | |
| 1-138, gnl|Hg17|chr3 (130715959-130716096) | |
| 1-138, gnl|loxAfr1|scaffold_12459 (49225-49402) | |
| 1-138, gnl|mm7|chr6 (115948936-115949111) | |
| 1-138, gnl|Mm7|chr6 (115948968-115949105) | |
| 1-138, gnl|monDom2|scaffold_5 (40532592-40532767) | |
| 1-138, gnl|oryCun1|scaffold_213711 (11258-11082) | |
| 1-138, gnl|panTro1|chr2 (132772089-132772265) | |
| 1-138, gnl|rheMac2|chr11 (85302591-85302415) | |
| 1-138, gnl|rn3|chr4 (152293923-152294098) | |
| 1-138, gnl|tetNig1|chr9 (6686397-6686229) | |
| 1-138, gnl|xenTro1|scaffold_172 (1610949-1611123) | |
| 249-373, gnl|bosTau2|chr8 (40857359-40857483) | |
| 249-373, gnl|canFam2|chr20 (8651385-8651283) | |
| 249-373, gnl|fr1|chrUn (73085529-73085628) | |
| 249-373, gnl|galGal2|chr12 (19424736-19424841) | |
| 249-373, gnl|hg17|chr3 (130719005-130719107) | |
| 249-373, gnl|Hg17|chr3 (130719009-130719133) | |
| 249-373, gnl|loxAfr1|scaffold_77186 (5763-5658) | |
| 249-373, gnl|mm7|chr6 (115950015-115950117) | |
| 249-373, gnl|Mm7|chr6 (115950019-115950143) | |
| 249-373, gnl|monDom2|scaffold_5 (40534157-40534262) | |
| 249-373, gnl|oryCun1|scaffold_213711 (9664-9562) | |
| 249-373, gnl|panTro1|chr2 (132775671-132775773) | |
| 249-373, gnl|rheMac2|chr11 (85300589-85300487) | |
| 249-373, gnl|rn3|chr4 (152295035-152295137) | |
| 249-373, gnl|tetNig1|chr9 (6685979-6685873) | |
| 249-373, gnl|xenTro1|scaffold_172 (1627018-1627123) | |
| 617-1068, gnl|bosTau2|chr8 (40859257-40859716) | |
| 617-1068, gnl|Hg17|chr3 (130721713-130722165) | |
| 617-1068, gnl|Mm7|chr6 (115951905-115952368) |
| Aligned organism(s): 37 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-138, gnl|bosTau2|chr8 (40855712-40855849) | |
| 1-138, gnl|canFam2|chr20 (8652803-8652627) | |
| 1-138, gnl|danRer3|chrNA (191350054-191349885) | |
| 1-138, gnl|echTel1|scaffold_313045 (67781-67605) | |
| 1-138, gnl|fr1|chrUn (73085100-73085273) | |
| 1-138, gnl|galGal2|chr12 (19423106-19423282) | |
| 1-138, gnl|hg17|chr3 (130715927-130716103) | |
| 1-138, gnl|Hg17|chr3 (130715959-130716096) | |
| 1-138, gnl|loxAfr1|scaffold_12459 (49225-49402) | |
| 1-138, gnl|mm7|chr6 (115948936-115949111) | |
| 1-138, gnl|Mm7|chr6 (115948968-115949105) | |
| 1-138, gnl|monDom2|scaffold_5 (40532592-40532767) | |
| 1-138, gnl|oryCun1|scaffold_213711 (11258-11082) | |
| 1-138, gnl|panTro1|chr2 (132772089-132772265) | |
| 1-138, gnl|rheMac2|chr11 (85302591-85302415) | |
| 1-138, gnl|rn3|chr4 (152293923-152294098) | |
| 1-138, gnl|tetNig1|chr9 (6686397-6686229) | |
| 1-138, gnl|xenTro1|scaffold_172 (1610949-1611123) | |
| 249-373, gnl|bosTau2|chr8 (40857359-40857483) | |
| 249-373, gnl|canFam2|chr20 (8651385-8651283) | |
| 249-373, gnl|fr1|chrUn (73085529-73085628) | |
| 249-373, gnl|galGal2|chr12 (19424736-19424841) | |
| 249-373, gnl|hg17|chr3 (130719005-130719107) | |
| 249-373, gnl|Hg17|chr3 (130719009-130719133) | |
| 249-373, gnl|loxAfr1|scaffold_77186 (5763-5658) | |
| 249-373, gnl|mm7|chr6 (115950015-115950117) | |
| 249-373, gnl|Mm7|chr6 (115950019-115950143) | |
| 249-373, gnl|monDom2|scaffold_5 (40534157-40534262) | |
| 249-373, gnl|oryCun1|scaffold_213711 (9664-9562) | |
| 249-373, gnl|panTro1|chr2 (132775671-132775773) | |
| 249-373, gnl|rheMac2|chr11 (85300589-85300487) | |
| 249-373, gnl|rn3|chr4 (152295035-152295137) | |
| 249-373, gnl|tetNig1|chr9 (6685979-6685873) | |
| 249-373, gnl|xenTro1|scaffold_172 (1627018-1627123) | |
| 617-1068, gnl|bosTau2|chr8 (40859257-40859716) | |
| 617-1068, gnl|Hg17|chr3 (130721713-130722165) | |
| 617-1068, gnl|Mm7|chr6 (115951905-115952368) |
| Expressed library(ies): 9 entry(ies) | More info |
| Expressed library(ies): 9 entry(ies) | Help | Less info |
| fhi (0.339155) | |
| cte (0.29274) | |
| hlv (0.278513) | |
| che (0.272628) | |
| fce (0.271592) | |
| med (0.232504) | |
| lnt (0.142308) | |
| lyg (0.133103) | |
| ebs (0.118301) |
| Expressed library(ies): 9 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| fhi (0.339155) | |
| cte (0.29274) | |
| hlv (0.278513) | |
| che (0.272628) | |
| fce (0.271592) | |
| med (0.232504) | |
| lnt (0.142308) | |
| lyg (0.133103) | |
| ebs (0.118301) |