Non-Coding RNA Search

Ss1.1-Pig4-TMW8001J03.5

Sequence:


               
               CGCTGACTCGCGGGCTGCTAGGCCTGGGTCGGGTCCGGCCGTACCGCACGGGGCCGCTTA
GAGTGGAGGCCGCCTGGGGGCAGGCGGGCTAGTGGCGCAGGTATATGTGAAGATTTCTTG
GCAGTTTAGCGTGGAGACCGTTGATCTGACCGCCTGGCCCGGATGTCTGCCTGCTCTGGG
CTGACGAGGGAGAGCGCCCAAATGAGCAGGGTGTCGCCGCAGACCTCTGGTGCTCCCCCG
GTGCTGAACGGGCTAACTGTCACTCACACTCAGGCGCATGCCAGCGGCTTACAGCAGGTT
CCGCAGCTGGTGCCCGCCGGCCCTGGGGGCGGAGGCAAAGCTGCGCCTCCAAGCAAGCAG
AGCAAGAAGAGTTCGCCCATGGATCGCAACAGTGATGAGTACCGGCAGCGCAGAGAGAGG
AACAACATGGCTGTGAAAAAGAGCCGGTTGAAAAGCAAGCAGAAAGCCCAGGATACACTG
CAGAGAGTGAATCAGCTCAAGGAAGAGAATGAACGGTTGGAAGCAAAAATTAAATTGCTG
ACTAAGGAATTAAGTGTACTGAAGGATTTGTTTCTTGAGCATGCACACAACCTTGCAGAT
AACGTGCAACCCAGTAGCACTGAAAATACAACGAATTCGGATAGTGCAGGACAGTAGGCC
TCCCCCCTTCCAAACTTCACAGCTTGTGGCTGGAACGGAAAAGGTGTGGCGGCCGACACC
ACTCACATCATCAGCTGAACCTTGTCTTGTGCCATTAGAGATGCGTTGAAGGTTGTTTTC
TAGGATCATCACTGAAGAGTTGATTAGCTGGAAACGTTAGCCATGTAATTTGAATATCTG
GTTTTAAATTATGAGGATTTCTTTGGGGATTAAAAAAAAACATTTTTAAAGGATAGATTA
AAAAAAAATAATTCCCTGGACCTTTATGTTCTTAATTACATCCTGACTTCCCAAGGAATG
TTTCTTTTTTTAAGGTCGACAAAAGGAATGGGGAACTGGCAAGTCATGCAGTAAGTTCTT
GGTTTTCATCGATATGGTAAATTGGATGGAGACAAGTTGAATGCCATCTCTGTTAATCCA
TTTGTGACTTTTTTCTAAATTATGTATTAAAAATGCTTAGGGCTATAGAAGCCAATCACT
TTGTAATGTGGAGTGATTTTATGTATAGTATAAACCTCGTTTTAGCATCATTGGTACTGC
TTTCCCCAGCAAGTACAAGCTTTTGAATAGCAATGTCAGGTTAAGTAAAGAAACCCCATT
GCATTTTAAAGGCAGTATGCAGCCAGTTGGCTTAAAAACTTAAATAGTATTTAGGAAGCA
AATAGGTTTATAAAAAATAAAAGCAGAGCATATTAGAATTACACTTTTAGGATGCCTTTG
GGTTATTGAATTGGCATTATTTTGCTAAAATAAAAAAAACCCATAACAGTTCAGTGGTTT
AGAGAAACTTGTGTACCAAAATCTTAGTTTCTACAGATGCTAGTAAAGTAAGCTTTTTTT
TTTTTAAAGACAAAACCATTTGGACAGCCAGGTTAGTAAACAAAATGTCATAACAGTTAT
GACCACACAAGCTGCTGATTAGGATTTTGAATATTAATTTCAGCAGGTAATTTCTCCTGT
GTTCAGACATACTGCATCGGGGCCGCAGTTTTTAAAAGCAAAAATTTCTTGTGAAGGATC
ATATGGTATTTGATCTTAATGACCTGATGATTAGAAAAACACATCAACTCCATGCCATCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGCTGACTCGCGGGCTGCTAGGCCTGGGTCGGGTCCGGCCGTACCGCACGGGGCCGCTTA
GAGTGGAGGCCGCCTGGGGGCAGGCGGGCTAGTGGCGCAGGTATATGTGAAGATTTCTTG
GCAGTTTAGCGTGGAGACCGTTGATCTGACCGCCTGGCCCGGATGTCTGCCTGCTCTGGG
CTGACGAGGGAGAGCGCCCAAATGAGCAGGGTGTCGCCGCAGACCTCTGGTGCTCCCCCG
GTGCTGAACGGGCTAACTGTCACTCACACTCAGGCGCATGCCAGCGGCTTACAGCAGGTT
CCGCAGCTGGTGCCCGCCGGCCCTGGGGGCGGAGGCAAAGCTGCGCCTCCAAGCAAGCAG
AGCAAGAAGAGTTCGCCCATGGATCGCAACAGTGATGAGTACCGGCAGCGCAGAGAGAGG
AACAACATGGCTGTGAAAAAGAGCCGGTTGAAAAGCAAGCAGAAAGCCCAGGATACACTG
CAGAGAGTGAATCAGCTCAAGGAAGAGAATGAACGGTTGGAAGCAAAAATTAAATTGCTG
ACTAAGGAATTAAGTGTACTGAAGGATTTGTTTCTTGAGCATGCACACAACCTTGCAGAT
AACGTGCAACCCAGTAGCACTGAAAATACAACGAATTCGGATAGTGCAGGACAGTAGGCC
TCCCCCCTTCCAAACTTCACAGCTTGTGGCTGGAACGGAAAAGGTGTGGCGGCCGACACC
ACTCACATCATCAGCTGAACCTTGTCTTGTGCCATTAGAGATGCGTTGAAGGTTGTTTTC
TAGGATCATCACTGAAGAGTTGATTAGCTGGAAACGTTAGCCATGTAATTTGAATATCTG
GTTTTAAATTATGAGGATTTCTTTGGGGATTAAAAAAAAACATTTTTAAAGGATAGATTA
AAAAAAAATAATTCCCTGGACCTTTATGTTCTTAATTACATCCTGACTTCCCAAGGAATG
TTTCTTTTTTTAAGGTCGACAAAAGGAATGGGGAACTGGCAAGTCATGCAGTAAGTTCTT
GGTTTTCATCGATATGGTAAATTGGATGGAGACAAGTTGAATGCCATCTCTGTTAATCCA
TTTGTGACTTTTTTCTAAATTATGTATTAAAAATGCTTAGGGCTATAGAAGCCAATCACT
TTGTAATGTGGAGTGATTTTATGTATAGTATAAACCTCGTTTTAGCATCATTGGTACTGC
TTTCCCCAGCAAGTACAAGCTTTTGAATAGCAATGTCAGGTTAAGTAAAGAAACCCCATT
GCATTTTAAAGGCAGTATGCAGCCAGTTGGCTTAAAAACTTAAATAGTATTTAGGAAGCA
AATAGGTTTATAAAAAATAAAAGCAGAGCATATTAGAATTACACTTTTAGGATGCCTTTG
GGTTATTGAATTGGCATTATTTTGCTAAAATAAAAAAAACCCATAACAGTTCAGTGGTTT
AGAGAAACTTGTGTACCAAAATCTTAGTTTCTACAGATGCTAGTAAAGTAAGCTTTTTTT
TTTTTAAAGACAAAACCATTTGGACAGCCAGGTTAGTAAACAAAATGTCATAACAGTTAT
GACCACACAAGCTGCTGATTAGGATTTTGAATATTAATTTCAGCAGGTAATTTCTCCTGT
GTTCAGACATACTGCATCGGGGCCGCAGTTTTTAAAAGCAAAAATTTCTTGTGAAGGATC
ATATGGTATTTGATCTTAATGACCTGATGATTAGAAAAACACATCAACTCCATGCCATCT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               CEBPG_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               CEBPG_HUMAN

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               218-377, + strand, RNAz p=0.640478

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               218-377, + strand, RNAz p=0.640478

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               99-1738, gnl|bosTau2|chr18 (36670118-36671705)
               

               
               99-1738, gnl|Hg17|chr19 (38561888-38563489)
               

               
               99-1738, gnl|Mm7|chr7 (31939992-31938230)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               99-1738, gnl|bosTau2|chr18 (36670118-36671705)
               

               
               99-1738, gnl|Hg17|chr19 (38561888-38563489)
               

               
               99-1738, gnl|Mm7|chr7 (31939992-31938230)

Expressed library(ies): 9 entry(ies)

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Expressed library(ies): 9 entry(ies)

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               ill (0.351185)
               

               
               ece (0.229305)
               

               
               ton (0.1755)
               

               
               duo (0.172801)
               

               
               isp (0.150376)
               

               
               ski (0.146735)
               

               
               ute (0.132784)
               

               
               tra (0.123092)
               

               
               eru (0.120048)

Expressed library(ies): 9 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ill (0.351185)
               

               
               ece (0.229305)
               

               
               ton (0.1755)
               

               
               duo (0.172801)
               

               
               isp (0.150376)
               

               
               ski (0.146735)
               

               
               ute (0.132784)
               

               
               tra (0.123092)
               

               
               eru (0.120048)

	99-1738, gnl\|bosTau2\|chr18 (36670118-36671705)
	99-1738, gnl\|Hg17\|chr19 (38561888-38563489)
	99-1738, gnl\|Mm7\|chr7 (31939992-31938230)

	ill (0.351185)
	ece (0.229305)
	ton (0.1755)
	duo (0.172801)
	isp (0.150376)
	ski (0.146735)
	ute (0.132784)
	tra (0.123092)
	eru (0.120048)