Non-Coding RNA Search

Ss1.1-Pig4-TMW8001K08.5

Sequence:


               
               CTGGGATCCGGCCCGGGCCGAGCGCGCGGCGCGACGACTGCGGGTGACTAGCATGCAGAT
AGCCATTCTCTGACCTGCTGCCCTTCTTCTGACATGGCCCACCGAGGTGGGGAGAGGGAC
TTCCAGACCTCAGCGCGGCGCATGGGCACCTCGTTGCTCTTCCAGCTTTCGGTGCATGAG
CGGGAGCTGGACCTAGTGTTTCTGGACCATAGCTATGCCAAGCCTTGGAGTGCCCACCCA
GATGCCAGTAGTGCCCGCCCCACCCGCATGCTCTTTGTTACTCCCCGGAGGCAGCACGAA
AGTACCATTGAATCAGATGTCCCAATAGACGTGGAGACAGTCACATCAACACCTGTGCCA
CTCTATGACAATCAGAAAGCGCGCAGTGTGATGAATGAGTGTGAGCGGCACGTCATCTTC
GCTAGGACCGATGCAGATGCCCCTCCCCCACCGGAGGACTGGGAGGAGCATGTCAACAGG
ACTGGCTGGACAATGGCCCAGAACAAGCTATTCAACAAGATCCTCAAAGCCCTGCAGTCT
GACCGGCTTGCCCGCTTGGCCAATGAAGGGGCTTGTAACGAGCCAGTGCTGCGCCGTGTT
GCTGTGGACAAGTGTGCGAGGAGAAATGCATGTGCCCAGAAAACAACCCCAAACCTCTGG
GTGCTTGCTGTGGATTCTGCCCAAGACACCATCAACCCGAAATCTCAGCCTGCACCTGCA
GCCCTGGAGCTGCACCTGGGTCCAGAAGATACTCTGGCGCTATCTTGTGGACATTTGCAC
TAACAGCAAGTCTCATGTCTTCCTCCTCTCTCTGGCTCAGCAGCCCCCCAGGGCTTCCTT
GGCCGTGGACAATATGTTGGTTAGATTTAGTTCTGCTTTCTTGAAATACCAACAAGTGCC
TTTCCAAGTGGGCTATTTCTCTCTCAAAGATTCTCAGAGCCTTGAGGCCAACCTACCCCC
TGCCACTCTGTTCAAACACTTAGCTCCCCACCCATCATGTCATGACAACCTTCTTCCTTC
TTGTATATCTGTGCACATATGTATTTATGAAGATAGGTGTGTACATGTAGAACTATTAAT
GTTTTCTTCATTGGCTGTTATTCCTTCATTTGTTCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTGGGATCCGGCCCGGGCCGAGCGCGCGGCGCGACGACTGCGGGTGACTAGCATGCAGAT
AGCCATTCTCTGACCTGCTGCCCTTCTTCTGACATGGCCCACCGAGGTGGGGAGAGGGAC
TTCCAGACCTCAGCGCGGCGCATGGGCACCTCGTTGCTCTTCCAGCTTTCGGTGCATGAG
CGGGAGCTGGACCTAGTGTTTCTGGACCATAGCTATGCCAAGCCTTGGAGTGCCCACCCA
GATGCCAGTAGTGCCCGCCCCACCCGCATGCTCTTTGTTACTCCCCGGAGGCAGCACGAA
AGTACCATTGAATCAGATGTCCCAATAGACGTGGAGACAGTCACATCAACACCTGTGCCA
CTCTATGACAATCAGAAAGCGCGCAGTGTGATGAATGAGTGTGAGCGGCACGTCATCTTC
GCTAGGACCGATGCAGATGCCCCTCCCCCACCGGAGGACTGGGAGGAGCATGTCAACAGG
ACTGGCTGGACAATGGCCCAGAACAAGCTATTCAACAAGATCCTCAAAGCCCTGCAGTCT
GACCGGCTTGCCCGCTTGGCCAATGAAGGGGCTTGTAACGAGCCAGTGCTGCGCCGTGTT
GCTGTGGACAAGTGTGCGAGGAGAAATGCATGTGCCCAGAAAACAACCCCAAACCTCTGG
GTGCTTGCTGTGGATTCTGCCCAAGACACCATCAACCCGAAATCTCAGCCTGCACCTGCA
GCCCTGGAGCTGCACCTGGGTCCAGAAGATACTCTGGCGCTATCTTGTGGACATTTGCAC
TAACAGCAAGTCTCATGTCTTCCTCCTCTCTCTGGCTCAGCAGCCCCCCAGGGCTTCCTT
GGCCGTGGACAATATGTTGGTTAGATTTAGTTCTGCTTTCTTGAAATACCAACAAGTGCC
TTTCCAAGTGGGCTATTTCTCTCTCAAAGATTCTCAGAGCCTTGAGGCCAACCTACCCCC
TGCCACTCTGTTCAAACACTTAGCTCCCCACCCATCATGTCATGACAACCTTCTTCCTTC
TTGTATATCTGTGCACATATGTATTTATGAAGATAGGTGTGTACATGTAGAACTATTAAT
GTTTTCTTCATTGGCTGTTATTCCTTCATTTGTTCA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|50795254|ref|XP_423759.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|50795254|ref|XP_423759.1|

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               37-308, gnl|bosTau2|chr11 (3641183-3641454)
               

               
               37-308, gnl|Hg17|chr2 (96724803-96724532)
               

               
               37-308, gnl|Mm7|chr1 (36609422-36609150)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               37-308, gnl|bosTau2|chr11 (3641183-3641454)
               

               
               37-308, gnl|Hg17|chr2 (96724803-96724532)
               

               
               37-308, gnl|Mm7|chr1 (36609422-36609150)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cje (0.165235)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cje (0.165235)

	37-308, gnl\|bosTau2\|chr11 (3641183-3641454)
	37-308, gnl\|Hg17\|chr2 (96724803-96724532)
	37-308, gnl\|Mm7\|chr1 (36609422-36609150)