Non-Coding RNA Search

Ss1.1-Pig4-TMW8001K09.5

Sequence:


               
               GAGTCCTATGGTTACTAATTAGGTTCATTACTGCTGAGCCACAGTAGGAACTCCTAAACT
AGTTTTACTTTTATCACAAAAGTAATTTGTATATATCTAAAGAGTTCAGACTTCAGAATG
ATATAAAAGGAGACCTTAAAAGGCCTTTTCCTTTCTTCCCATTAAGCCTGGTGTCTCAGA
GATAGCAACTGTTTATAGCTTATTATAAATCCTTTCAGAAATTTTCTTTGTACATACGTT
ATTATGACATATGTCTCTCCTTTTTTTAAAAAAAATGGGATCATATCAGGCAGTTTTTGC
CTCTTCCTTCTTCTTAATTTGATTTTTAGGTTTTTTAATTTAATAGTACATCTCAGTTTT
TTCCATATTAGCACATGAAAAATCTTGTTTTTAATACTCTCATAATGTTCCATTGTATAT
TAAATTAGTGCTCTGTTGATGGGCATTTAAATTGTCGGGTTTTTTTTTTTTTTTTTGTAG
TTTTTTAGGTTTTCTGTAGAGTAACTTTGCTGGAGTAAGATTGCTGGGTTAAAGTGACAT
GCTGAACTTGTAAGAAGCAAGATCAGAATTTTTTTTTTTTTAATAAACTGGCAAGAACAT
GTAAAATAGAGAAGAAGGGAATGGTCTCTGGGAATGCAAAATATGTCATCTTTTTACAGT
GGTTGACAGTTGGTTTGTTTAGATAAACAGTGAATAATAATGATGACTGAAGTTTTCACC
ACACTCAGAAAATGGTAACTATGTGAAGTGATGGATGTGTTAATTAACCTGATTATGATA
ATCATTTCACATGGTATACATGTCAAATTTATTATTGTACACTTTTAAAATATTACTGTA
TTTGTTAATTATACTTCAATAAAGTTGAAAAAATTGAAATATTGATGAGTTAAATAAATT
GATTCATTCTGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAGTCCTATGGTTACTAATTAGGTTCATTACTGCTGAGCCACAGTAGGAACTCCTAAACT
AGTTTTACTTTTATCACAAAAGTAATTTGTATATATCTAAAGAGTTCAGACTTCAGAATG
ATATAAAAGGAGACCTTAAAAGGCCTTTTCCTTTCTTCCCATTAAGCCTGGTGTCTCAGA
GATAGCAACTGTTTATAGCTTATTATAAATCCTTTCAGAAATTTTCTTTGTACATACGTT
ATTATGACATATGTCTCTCCTTTTTTTAAAAAAAATGGGATCATATCAGGCAGTTTTTGC
CTCTTCCTTCTTCTTAATTTGATTTTTAGGTTTTTTAATTTAATAGTACATCTCAGTTTT
TTCCATATTAGCACATGAAAAATCTTGTTTTTAATACTCTCATAATGTTCCATTGTATAT
TAAATTAGTGCTCTGTTGATGGGCATTTAAATTGTCGGGTTTTTTTTTTTTTTTTTGTAG
TTTTTTAGGTTTTCTGTAGAGTAACTTTGCTGGAGTAAGATTGCTGGGTTAAAGTGACAT
GCTGAACTTGTAAGAAGCAAGATCAGAATTTTTTTTTTTTTAATAAACTGGCAAGAACAT
GTAAAATAGAGAAGAAGGGAATGGTCTCTGGGAATGCAAAATATGTCATCTTTTTACAGT
GGTTGACAGTTGGTTTGTTTAGATAAACAGTGAATAATAATGATGACTGAAGTTTTCACC
ACACTCAGAAAATGGTAACTATGTGAAGTGATGGATGTGTTAATTAACCTGATTATGATA
ATCATTTCACATGGTATACATGTCAAATTTATTATTGTACACTTTTAAAATATTACTGTA
TTTGTTAATTATACTTCAATAAAGTTGAAAAAATTGAAATATTGATGAGTTAAATAAATT
GATTCATTCTGA

Aligned organism(s): 1 entry(ies)

More info

Aligned organism(s): 1 entry(ies)

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               294-909, gnl|bosTau2|chr10 (38310582-38309981)

Aligned organism(s): 1 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               294-909, gnl|bosTau2|chr10 (38310582-38309981)

Expressed library(ies): 2 entry(ies)

More info

Expressed library(ies): 2 entry(ies)

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               fce (0.271592)
               

               
               fty (0.17584)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fce (0.271592)
               

               
               fty (0.17584)